PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30601-30650 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | * | 98.4561 | 97.7047 | 99.2192 | 76.7013 | 3448 | 81 | 3431 | 27 | 5 | 18.5185 | |
| dgrover-gatk | SNP | tv | map_l100_m0_e0 | het | 98.8895 | 99.2661 | 98.5157 | 76.1747 | 7169 | 53 | 7168 | 108 | 20 | 18.5185 | |
| ckim-isaac | SNP | * | map_l125_m0_e0 | * | 70.7547 | 54.8207 | 99.7466 | 75.5092 | 10627 | 8758 | 10627 | 27 | 5 | 18.5185 | |
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | het | 94.6019 | 98.6282 | 90.8914 | 86.7158 | 2804 | 39 | 2804 | 281 | 52 | 18.5053 | |
| dgrover-gatk | SNP | * | map_l100_m2_e1 | het | 99.3747 | 99.4755 | 99.2742 | 71.6392 | 46652 | 246 | 46641 | 341 | 63 | 18.4751 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.9647 | 99.1698 | 96.7887 | 50.7481 | 6689 | 56 | 6691 | 222 | 41 | 18.4685 | |
| bgallagher-sentieon | SNP | * | map_l250_m0_e0 | * | 97.7220 | 98.4543 | 97.0005 | 93.1217 | 2102 | 33 | 2102 | 65 | 12 | 18.4615 | |
| cchapple-custom | SNP | tv | map_l250_m2_e1 | * | 95.6819 | 95.8162 | 95.5479 | 90.3656 | 2794 | 122 | 2790 | 130 | 24 | 18.4615 | |
| cchapple-custom | SNP | tv | map_l250_m2_e1 | het | 94.5928 | 95.6743 | 93.5356 | 91.6445 | 1880 | 85 | 1881 | 130 | 24 | 18.4615 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | * | 98.3520 | 99.0401 | 97.6734 | 71.9819 | 73254 | 710 | 73257 | 1745 | 322 | 18.4527 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 82.8907 | 73.1218 | 95.6723 | 82.2308 | 2258 | 830 | 2277 | 103 | 19 | 18.4466 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | het | 98.0150 | 98.4486 | 97.5853 | 79.8450 | 7234 | 114 | 7234 | 179 | 33 | 18.4358 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.7234 | 98.5247 | 93.0769 | 67.4612 | 6144 | 92 | 5324 | 396 | 73 | 18.4343 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 42.4890 | 35.9504 | 51.9347 | 63.3123 | 348 | 620 | 604 | 559 | 103 | 18.4258 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | * | 85.8913 | 80.9294 | 91.5013 | 89.0859 | 2856 | 673 | 3273 | 304 | 56 | 18.4211 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | het | 89.3913 | 98.4674 | 81.8471 | 92.4273 | 514 | 8 | 514 | 114 | 21 | 18.4211 | |
| ckim-isaac | SNP | ti | map_l125_m2_e0 | * | 75.2532 | 60.4006 | 99.7925 | 72.3144 | 18276 | 11982 | 18276 | 38 | 7 | 18.4211 | |
| bgallagher-sentieon | SNP | ti | map_l125_m1_e0 | * | 99.3257 | 99.4273 | 99.2243 | 71.0550 | 29167 | 168 | 29163 | 228 | 42 | 18.4211 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.0580 | 99.3700 | 98.7479 | 70.2830 | 2997 | 19 | 2997 | 38 | 7 | 18.4211 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5047 | 99.5794 | 99.4300 | 77.4061 | 6629 | 28 | 6629 | 38 | 7 | 18.4211 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | * | 98.3564 | 99.0460 | 97.6764 | 72.0101 | 74024 | 713 | 74027 | 1761 | 324 | 18.3986 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 81.9397 | 72.4014 | 94.3726 | 87.2379 | 1010 | 385 | 1459 | 87 | 16 | 18.3908 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | * | 70.0357 | 66.4337 | 74.0506 | 91.7565 | 3042 | 1537 | 3042 | 1066 | 196 | 18.3865 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | het | 98.1558 | 99.0660 | 97.2621 | 74.0240 | 30336 | 286 | 30338 | 854 | 157 | 18.3841 | |
| ghariani-varprowl | SNP | ti | map_siren | * | 99.0024 | 99.3374 | 98.6698 | 59.6146 | 99690 | 665 | 99693 | 1344 | 247 | 18.3780 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3694 | 98.9198 | 99.8231 | 52.8249 | 27657 | 302 | 27656 | 49 | 9 | 18.3673 | |
| bgallagher-sentieon | INDEL | * | map_l100_m0_e0 | * | 97.7511 | 98.5925 | 96.9240 | 87.0372 | 1541 | 22 | 1544 | 49 | 9 | 18.3673 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | het | 97.7378 | 97.9897 | 97.4872 | 91.2583 | 1901 | 39 | 1901 | 49 | 9 | 18.3673 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | het | 97.7665 | 98.0153 | 97.5190 | 91.3080 | 1926 | 39 | 1926 | 49 | 9 | 18.3673 | |
| ckim-isaac | SNP | * | HG002compoundhet | het | 87.1652 | 78.2691 | 98.3428 | 43.2349 | 11097 | 3081 | 11631 | 196 | 36 | 18.3673 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | het | 97.3365 | 98.9699 | 95.7561 | 79.6531 | 29016 | 302 | 29016 | 1286 | 236 | 18.3515 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | het | 89.7345 | 98.6381 | 82.3052 | 92.4436 | 507 | 7 | 507 | 109 | 20 | 18.3486 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | het | 97.3535 | 98.9777 | 95.7818 | 79.7151 | 29337 | 303 | 29337 | 1292 | 237 | 18.3437 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | * | 90.5545 | 95.5013 | 86.0950 | 91.3170 | 743 | 35 | 743 | 120 | 22 | 18.3333 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | het | 93.1137 | 91.5475 | 94.7345 | 82.7714 | 2112 | 195 | 2159 | 120 | 22 | 18.3333 | |
| gduggal-bwafb | SNP | tv | map_l250_m2_e0 | het | 96.7209 | 96.5464 | 96.8960 | 89.9730 | 1873 | 67 | 1873 | 60 | 11 | 18.3333 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | het | 98.1632 | 99.0762 | 97.2668 | 74.0488 | 30674 | 286 | 30676 | 862 | 158 | 18.3295 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.5044 | 99.5907 | 91.7402 | 55.4244 | 1460 | 6 | 1455 | 131 | 24 | 18.3206 | |
| ghariani-varprowl | SNP | tv | map_l125_m1_e0 | * | 97.4146 | 98.6888 | 96.1728 | 76.4417 | 15806 | 210 | 15806 | 629 | 115 | 18.2830 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | het | 94.5817 | 96.3296 | 92.8962 | 87.3662 | 1286 | 49 | 1360 | 104 | 19 | 18.2692 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1685 | 99.1166 | 97.2384 | 51.9217 | 11332 | 101 | 11373 | 323 | 59 | 18.2663 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | * | 90.8639 | 95.8060 | 86.4066 | 91.3346 | 731 | 32 | 731 | 115 | 21 | 18.2609 | |
| hfeng-pmm3 | SNP | ti | map_l100_m2_e0 | * | 99.6760 | 99.5874 | 99.7647 | 64.5930 | 48759 | 202 | 48752 | 115 | 21 | 18.2609 | |
| ciseli-custom | INDEL | C1_5 | * | * | 32.7774 | 40.0000 | 27.7641 | 94.8771 | 4 | 6 | 339 | 882 | 161 | 18.2540 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.5943 | 98.9387 | 96.2859 | 86.8966 | 4102 | 44 | 4122 | 159 | 29 | 18.2390 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 84.5873 | 83.7607 | 85.4305 | 91.2158 | 98 | 19 | 129 | 22 | 4 | 18.1818 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8890 | 98.8482 | 98.9300 | 77.8496 | 944 | 11 | 1017 | 11 | 2 | 18.1818 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 58.1704 | 48.0000 | 73.8095 | 94.1423 | 12 | 13 | 31 | 11 | 2 | 18.1818 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 58.8648 | 48.0000 | 76.0870 | 94.2284 | 12 | 13 | 35 | 11 | 2 | 18.1818 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m1_e0 | * | 98.7623 | 98.3570 | 99.1711 | 82.7819 | 1317 | 22 | 1316 | 11 | 2 | 18.1818 | |