PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3001-3050 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 19.6078 | 11.6279 | 62.5000 | 75.7576 | 10 | 76 | 5 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 51.9110 | 37.2480 | 85.6132 | 63.2900 | 425 | 716 | 363 | 61 | 61 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 43.3731 | 29.1284 | 84.8837 | 60.6107 | 127 | 309 | 219 | 39 | 39 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 53.5912 | 38.5935 | 87.6543 | 68.1102 | 225 | 358 | 71 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 70.5314 | 59.8361 | 85.8824 | 65.4472 | 73 | 49 | 73 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 33.0430 | 20.5706 | 83.9344 | 60.8974 | 137 | 529 | 256 | 49 | 49 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 49.6249 | 35.0531 | 84.9315 | 68.9362 | 231 | 428 | 62 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 24.6154 | 14.8148 | 72.7273 | 60.7143 | 16 | 92 | 16 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 22.6415 | 13.6364 | 66.6667 | 53.8462 | 9 | 57 | 12 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 40.0000 | 26.4045 | 82.4561 | 61.2245 | 47 | 131 | 47 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 32.0388 | 20.3704 | 75.0000 | 58.7629 | 22 | 86 | 30 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 53.1250 | 38.2022 | 87.1795 | 62.1359 | 34 | 55 | 34 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 41.8118 | 28.3019 | 80.0000 | 60.9375 | 15 | 38 | 20 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 14.4928 | 8.4746 | 50.0000 | 68.4211 | 5 | 54 | 3 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 30.9742 | 18.7970 | 87.9518 | 64.6809 | 25 | 108 | 73 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 46.1240 | 34.8974 | 68.0000 | 71.9101 | 119 | 222 | 17 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 51.1783 | 36.9565 | 83.1933 | 65.7061 | 153 | 261 | 99 | 20 | 20 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 37.1824 | 23.5849 | 87.8049 | 62.7273 | 25 | 81 | 72 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 52.0278 | 40.2098 | 73.6842 | 72.8571 | 115 | 171 | 14 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 65.0000 | 59.0909 | 72.2222 | 68.4211 | 13 | 9 | 13 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 31.6497 | 19.5122 | 83.7398 | 62.9518 | 48 | 198 | 103 | 20 | 20 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 47.7273 | 35.0000 | 75.0000 | 70.9091 | 133 | 247 | 24 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 33.0430 | 20.5706 | 83.9344 | 60.8974 | 137 | 529 | 256 | 49 | 49 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 49.6249 | 35.0531 | 84.9315 | 68.9362 | 231 | 428 | 62 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 51.7864 | 37.7083 | 82.6389 | 69.0323 | 181 | 299 | 119 | 25 | 25 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 41.7658 | 28.7500 | 76.3158 | 69.6000 | 46 | 114 | 58 | 18 | 18 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 54.0397 | 38.7097 | 89.4737 | 72.4638 | 108 | 171 | 34 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.0563 | 65.8537 | 90.0000 | 61.0390 | 27 | 14 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 57.2597 | 42.5532 | 87.5000 | 68.4211 | 20 | 27 | 21 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 54.2254 | 39.2857 | 87.5000 | 57.8947 | 11 | 17 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 66.6667 | 75.0000 | 60.0000 | 80.7692 | 3 | 1 | 3 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 50.6365 | 36.0825 | 84.8684 | 57.8947 | 140 | 248 | 129 | 23 | 23 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 49.1036 | 34.5238 | 85.0000 | 53.9171 | 58 | 110 | 85 | 15 | 15 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 49.6165 | 35.4286 | 82.7586 | 60.8108 | 62 | 113 | 24 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 58.8235 | 44.4444 | 86.9565 | 67.1429 | 20 | 25 | 20 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 61.4334 | 48.6486 | 83.3333 | 60.0000 | 18 | 19 | 15 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 38.8889 | 25.0000 | 87.5000 | 66.6667 | 4 | 12 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 51.8519 | 53.8462 | 50.0000 | 71.4286 | 7 | 6 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 87.5000 | 87.5000 | 87.5000 | 42.8571 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | * | 54.1375 | 38.3721 | 91.8919 | 72.3881 | 33 | 53 | 34 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | hetalt | 46.6667 | 43.7500 | 50.0000 | 77.7778 | 7 | 9 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | homalt | 64.7059 | 52.3810 | 84.6154 | 75.0000 | 11 | 10 | 11 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | segdup | * | 72.7273 | 59.5745 | 93.3333 | 85.9155 | 28 | 19 | 28 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | segdup | het | 55.8376 | 41.6667 | 84.6154 | 86.8687 | 10 | 14 | 11 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | HG002compoundhet | hetalt | 91.0057 | 84.5844 | 98.4821 | 73.0807 | 9454 | 1723 | 4282 | 66 | 66 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 87.7698 | 86.2191 | 89.3773 | 67.9201 | 244 | 39 | 244 | 29 | 29 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.5601 | 89.5000 | 93.7173 | 65.2095 | 179 | 21 | 179 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 90.0901 | 89.2857 | 90.9091 | 84.7575 | 100 | 12 | 60 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6173 | 93.5146 | 97.8166 | 73.7084 | 447 | 31 | 448 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.9597 | 93.3333 | 94.5946 | 89.0208 | 56 | 4 | 35 | 2 | 2 | 100.0000 | |