PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30251-30300 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | * | 75.7994 | 61.3194 | 99.2320 | 94.1880 | 1292 | 815 | 1292 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | het | 78.5553 | 65.1685 | 98.8636 | 94.8423 | 870 | 465 | 870 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e0 | * | 76.5529 | 62.2951 | 99.2743 | 94.4882 | 1368 | 828 | 1368 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e0 | het | 79.3282 | 66.2114 | 98.9259 | 95.1028 | 921 | 470 | 921 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | * | 76.7237 | 62.5169 | 99.2862 | 94.5201 | 1391 | 834 | 1391 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | het | 79.5754 | 66.5483 | 98.9440 | 95.1306 | 937 | 471 | 937 | 10 | 2 | 20.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | * | 78.5714 | 91.6667 | 68.7500 | 74.1935 | 11 | 1 | 11 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | het | 76.1905 | 100.0000 | 61.5385 | 77.1930 | 8 | 0 | 8 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m1_e0 | het | 75.0000 | 90.0000 | 64.2857 | 95.5056 | 18 | 2 | 18 | 10 | 2 | 20.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | func_cds | * | 74.0741 | 83.3333 | 66.6667 | 65.1163 | 10 | 2 | 10 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | func_cds | het | 78.2609 | 100.0000 | 64.2857 | 60.0000 | 9 | 0 | 9 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | het | 92.3077 | 96.8750 | 88.1517 | 92.7937 | 186 | 6 | 186 | 25 | 5 | 20.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | het | 92.2591 | 91.5789 | 92.9495 | 86.7487 | 783 | 72 | 791 | 60 | 12 | 20.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | het | 92.5169 | 91.7219 | 93.3259 | 87.8250 | 831 | 75 | 839 | 60 | 12 | 20.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 97.1264 | 8 | 0 | 5 | 5 | 1 | 20.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | homalt | 99.5466 | 99.4729 | 99.6203 | 81.0066 | 1321 | 7 | 1312 | 5 | 1 | 20.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | * | 96.9083 | 95.7760 | 98.0676 | 85.9889 | 2018 | 89 | 2030 | 40 | 8 | 20.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | * | 96.9636 | 95.8106 | 98.1447 | 86.9397 | 2104 | 92 | 2116 | 40 | 8 | 20.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | * | 96.0765 | 95.1362 | 97.0356 | 91.6003 | 489 | 25 | 491 | 15 | 3 | 20.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.0905 | 95.4023 | 94.7808 | 71.1793 | 415 | 20 | 454 | 25 | 5 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | * | 70.4293 | 54.5590 | 99.3197 | 95.9257 | 730 | 608 | 730 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | het | 73.6223 | 58.5965 | 99.0119 | 96.3513 | 501 | 354 | 501 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | * | 71.6038 | 55.9659 | 99.3695 | 96.1005 | 788 | 620 | 788 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | het | 74.9485 | 60.2649 | 99.0926 | 96.4657 | 546 | 360 | 546 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 81.0596 | 68.9189 | 98.3923 | 80.6832 | 306 | 138 | 306 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 81.6541 | 71.2598 | 95.5986 | 79.6197 | 543 | 219 | 543 | 25 | 5 | 20.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | * | 73.9130 | 58.9974 | 98.9224 | 95.6603 | 459 | 319 | 459 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | het | 76.1457 | 62.0690 | 98.4802 | 96.0428 | 324 | 198 | 324 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 71.9626 | 60.6299 | 88.5057 | 86.8976 | 77 | 50 | 77 | 10 | 2 | 20.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4887 | 99.3450 | 99.6329 | 63.1294 | 1365 | 9 | 1357 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | * | 97.7647 | 95.7862 | 99.8267 | 65.0696 | 11525 | 507 | 11521 | 20 | 4 | 20.0000 | |
| ltrigg-rtg2 | SNP | tv | HG002compoundhet | het | 99.1949 | 98.9300 | 99.4612 | 50.0484 | 4623 | 50 | 4615 | 25 | 5 | 20.0000 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | * | 76.3496 | 93.1034 | 64.7059 | 94.9525 | 54 | 4 | 55 | 30 | 6 | 20.0000 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | het | 76.6355 | 100.0000 | 62.1212 | 94.9309 | 37 | 0 | 41 | 25 | 5 | 20.0000 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | homalt | 84.8485 | 100.0000 | 73.6842 | 95.0262 | 12 | 0 | 14 | 5 | 1 | 20.0000 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | het | 36.6957 | 22.5910 | 97.6852 | 83.7594 | 211 | 723 | 211 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3909 | 99.0035 | 99.7815 | 31.9351 | 4570 | 46 | 4566 | 10 | 2 | 20.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7436 | 99.6160 | 99.8716 | 27.5888 | 3891 | 15 | 3890 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9373 | 98.2533 | 99.6310 | 67.7611 | 1350 | 24 | 1350 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.3910 | 88.2353 | 77.2727 | 89.0547 | 45 | 6 | 34 | 10 | 2 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | * | 98.3871 | 98.3871 | 98.3871 | 88.2620 | 305 | 5 | 305 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | het | 98.4089 | 97.7695 | 99.0566 | 94.8166 | 526 | 12 | 525 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 89.3443 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | het | 95.1613 | 98.3333 | 92.1875 | 89.6272 | 59 | 1 | 59 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | * | 98.3897 | 98.3871 | 98.3923 | 88.1388 | 305 | 5 | 306 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9810 | 96.5174 | 97.4490 | 87.0456 | 194 | 7 | 191 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | * | 92.6068 | 92.3077 | 92.9078 | 92.7357 | 132 | 11 | 131 | 10 | 2 | 20.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | het | 98.3404 | 97.9322 | 98.7521 | 81.2217 | 1184 | 25 | 1187 | 15 | 3 | 20.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | het | 98.3621 | 97.9299 | 98.7981 | 81.8710 | 1230 | 26 | 1233 | 15 | 3 | 20.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.3776 | 97.9495 | 98.8095 | 82.0257 | 1242 | 26 | 1245 | 15 | 3 | 20.0000 | |