PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2951-3000 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 91.8646 | 85.7424 | 98.9282 | 41.1728 | 6098 | 1014 | 923 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.9626 | 99.2511 | 83.9517 | 58.3543 | 2783 | 21 | 2783 | 532 | 532 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.0939 | 89.9412 | 98.6486 | 45.1271 | 4891 | 547 | 511 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 92.8529 | 99.4937 | 87.0432 | 60.7107 | 2358 | 12 | 2358 | 351 | 351 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 91.6751 | 85.4753 | 98.8445 | 42.9599 | 6132 | 1042 | 941 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.8745 | 84.4894 | 98.3036 | 44.9837 | 6809 | 1250 | 1159 | 20 | 20 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 93.2232 | 88.4116 | 98.5887 | 45.8515 | 4219 | 553 | 489 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 73.6947 | 65.2837 | 84.5936 | 37.0238 | 771 | 410 | 895 | 163 | 163 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.6945 | 66.8919 | 98.5577 | 39.0625 | 99 | 49 | 615 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 66.5254 | 97.5155 | 50.4823 | 35.8763 | 157 | 4 | 157 | 154 | 154 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.9519 | 83.7838 | 88.2353 | 61.3636 | 31 | 6 | 15 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2973 | 97.2973 | 97.2973 | 81.9512 | 72 | 2 | 72 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 85.7143 | 100.0000 | 75.0000 | 99.8385 | 6 | 0 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 92.7348 | 88.8325 | 96.9957 | 40.7125 | 1050 | 132 | 226 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.9795 | 96.8235 | 95.1501 | 49.1486 | 823 | 27 | 824 | 42 | 42 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 84.0574 | 73.1400 | 98.8060 | 22.4537 | 580 | 213 | 331 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 96.4583 | 96.5753 | 96.3415 | 31.6667 | 564 | 20 | 79 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1004 | 99.3228 | 98.8789 | 34.2183 | 440 | 3 | 441 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.4363 | 84.5070 | 97.2603 | 31.7757 | 120 | 22 | 142 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.5379 | 70.8333 | 98.8764 | 33.5821 | 17 | 7 | 88 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.3657 | 84.5361 | 97.0588 | 20.9302 | 82 | 15 | 33 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.4545 | 100.0000 | 91.3043 | 37.8378 | 21 | 0 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.8333 | 95.8333 | 95.8333 | 92.5466 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 71.6612 | 58.8235 | 91.6667 | 79.6610 | 40 | 28 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8254 | 95.3125 | 98.3871 | 89.5798 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 71.6612 | 58.8235 | 91.6667 | 80.3279 | 40 | 28 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 89.8387 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 69.8368 | 56.1644 | 92.3077 | 80.3030 | 41 | 32 | 12 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.1832 | 94.0299 | 98.4375 | 89.9054 | 63 | 4 | 63 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 94.8936 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.7085 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | homalt | 95.7746 | 94.4444 | 97.1429 | 91.7258 | 34 | 2 | 34 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.6473 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 96.6019 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | homalt | 94.1176 | 92.3077 | 96.0000 | 92.3780 | 24 | 2 | 24 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | homalt | 94.5455 | 92.8571 | 96.2963 | 92.5000 | 26 | 2 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | homalt | 94.7368 | 93.1034 | 96.4286 | 92.3288 | 27 | 2 | 27 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | hetalt | 77.9122 | 68.6869 | 90.0000 | 81.9820 | 68 | 31 | 18 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | segdup | * | 92.1680 | 88.4817 | 96.1749 | 92.8987 | 169 | 22 | 176 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | segdup | het | 92.0280 | 85.8696 | 99.1379 | 92.8439 | 79 | 13 | 115 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | segdup | homalt | 94.3396 | 100.0000 | 89.2857 | 93.3492 | 50 | 0 | 50 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | tech_badpromoters | * | 90.9091 | 88.2353 | 93.7500 | 52.9412 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | tech_badpromoters | homalt | 92.3077 | 100.0000 | 85.7143 | 53.3333 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | * | het | 55.7818 | 39.5143 | 94.8163 | 37.5746 | 1074 | 1644 | 1884 | 103 | 103 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | * | hetalt | 59.7317 | 43.8513 | 93.6441 | 57.0909 | 920 | 1178 | 221 | 15 | 15 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002complexvar | het | 56.0161 | 39.5489 | 95.9799 | 46.2162 | 263 | 402 | 382 | 16 | 16 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002complexvar | hetalt | 57.7977 | 43.2836 | 86.9565 | 69.5364 | 145 | 190 | 40 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002compoundhet | het | 28.9364 | 17.0213 | 96.4581 | 27.6068 | 8 | 39 | 817 | 30 | 30 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002compoundhet | hetalt | 60.2626 | 43.8127 | 96.4912 | 42.7136 | 917 | 1176 | 220 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 16.6887 | 9.4737 | 70.0000 | 64.9123 | 9 | 86 | 14 | 6 | 6 | 100.0000 | |