PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29651-29700 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | het | 97.0666 | 96.7742 | 97.3607 | 91.5698 | 330 | 11 | 332 | 9 | 2 | 22.2222 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 89.2733 | 88.9535 | 89.5954 | 83.6638 | 153 | 19 | 155 | 18 | 4 | 22.2222 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | * | 40.0000 | 57.1429 | 30.7692 | 93.1937 | 4 | 3 | 4 | 9 | 2 | 22.2222 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | homalt | 59.7701 | 76.4706 | 49.0566 | 94.4906 | 26 | 8 | 26 | 27 | 6 | 22.2222 | |
| qzeng-custom | INDEL | * | map_l100_m0_e0 | * | 82.0840 | 75.0480 | 90.5759 | 91.5253 | 1173 | 390 | 1557 | 162 | 36 | 22.2222 | |
| qzeng-custom | INDEL | D1_5 | segdup | het | 98.1482 | 98.6994 | 97.6032 | 95.6595 | 683 | 9 | 733 | 18 | 4 | 22.2222 | |
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | het | 95.2632 | 95.2632 | 95.2632 | 95.6049 | 181 | 9 | 181 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | het | 95.7143 | 95.7143 | 95.7143 | 95.7282 | 201 | 9 | 201 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | het | 95.7346 | 95.7346 | 95.7346 | 95.8193 | 202 | 9 | 202 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | het | 97.9249 | 97.7178 | 98.1328 | 87.6884 | 471 | 11 | 473 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | het | 98.0541 | 97.8599 | 98.2490 | 88.2809 | 503 | 11 | 505 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | het | 97.9860 | 97.7011 | 98.2726 | 88.3079 | 510 | 12 | 512 | 9 | 2 | 22.2222 | |
| anovak-vg | SNP | * | map_l125_m1_e0 | * | 81.0489 | 87.0673 | 75.8087 | 74.5245 | 39465 | 5862 | 39018 | 12451 | 2766 | 22.2151 | |
| anovak-vg | SNP | ti | map_l125_m2_e1 | * | 81.5574 | 87.0097 | 76.7480 | 75.9636 | 26598 | 3971 | 26376 | 7991 | 1774 | 22.2000 | |
| jpowers-varprowl | SNP | tv | map_siren | * | 98.2043 | 98.2321 | 98.1765 | 64.5026 | 45118 | 812 | 45118 | 838 | 186 | 22.1957 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 77.3318 | 82.5652 | 72.7223 | 71.1326 | 13274 | 2803 | 12037 | 4515 | 1002 | 22.1927 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 77.3318 | 82.5652 | 72.7223 | 71.1326 | 13274 | 2803 | 12037 | 4515 | 1002 | 22.1927 | |
| anovak-vg | SNP | ti | map_l150_m1_e0 | het | 75.5864 | 89.6281 | 65.3485 | 80.5450 | 11087 | 1283 | 11006 | 5836 | 1295 | 22.1899 | |
| dgrover-gatk | SNP | * | map_l125_m2_e1 | * | 99.3336 | 99.3263 | 99.3409 | 74.2508 | 46884 | 318 | 46878 | 311 | 69 | 22.1865 | |
| ciseli-custom | SNP | ti | HG002compoundhet | homalt | 81.8243 | 93.1296 | 72.9667 | 35.5461 | 6886 | 508 | 6872 | 2546 | 564 | 22.1524 | |
| ghariani-varprowl | SNP | * | map_l150_m0_e0 | het | 95.5372 | 98.2746 | 92.9482 | 86.2530 | 7803 | 137 | 7803 | 592 | 131 | 22.1284 | |
| anovak-vg | SNP | tv | map_l125_m2_e1 | het | 77.4408 | 91.5759 | 67.0858 | 78.0971 | 9664 | 889 | 9657 | 4738 | 1048 | 22.1190 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.5852 | 99.2612 | 97.9184 | 64.7490 | 55220 | 411 | 55320 | 1176 | 260 | 22.1088 | |
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | het | 72.3286 | 94.2105 | 58.6957 | 95.8488 | 179 | 11 | 270 | 190 | 42 | 22.1053 | |
| anovak-vg | SNP | tv | map_l125_m2_e0 | het | 77.3239 | 91.5342 | 66.9329 | 78.0559 | 9558 | 884 | 9554 | 4720 | 1043 | 22.0975 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.0248 | 95.3430 | 92.7426 | 84.9164 | 10298 | 503 | 10121 | 792 | 175 | 22.0960 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | * | 99.2480 | 98.6784 | 99.8242 | 55.9018 | 48831 | 654 | 48833 | 86 | 19 | 22.0930 | |
| anovak-vg | SNP | * | map_l250_m0_e0 | * | 72.9992 | 77.5176 | 68.9786 | 95.8110 | 1655 | 480 | 1641 | 738 | 163 | 22.0867 | |
| anovak-vg | SNP | * | map_l100_m1_e0 | * | 84.0947 | 88.8016 | 79.8617 | 69.2688 | 64295 | 8108 | 63514 | 16016 | 3537 | 22.0842 | |
| anovak-vg | SNP | * | map_l100_m2_e0 | * | 84.2603 | 88.9000 | 80.0809 | 71.0026 | 65754 | 8210 | 64960 | 16158 | 3566 | 22.0696 | |
| anovak-vg | SNP | * | map_l100_m2_e1 | * | 84.3316 | 88.9439 | 80.1741 | 71.0026 | 66474 | 8263 | 65661 | 16237 | 3582 | 22.0607 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8865 | 96.0317 | 89.9408 | 90.7338 | 1694 | 70 | 1824 | 204 | 45 | 22.0588 | |
| dgrover-gatk | SNP | * | map_siren | * | 99.6607 | 99.6410 | 99.6805 | 56.6949 | 145703 | 525 | 145680 | 467 | 103 | 22.0557 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.6316 | 99.0933 | 94.2892 | 74.2061 | 3060 | 28 | 3071 | 186 | 41 | 22.0430 | |
| anovak-vg | SNP | ti | map_l250_m0_e0 | het | 69.1155 | 80.6210 | 60.4839 | 96.0595 | 753 | 181 | 750 | 490 | 108 | 22.0408 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 69.9207 | 56.4189 | 91.9178 | 94.1495 | 1336 | 1032 | 1342 | 118 | 26 | 22.0339 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.4548 | 98.0660 | 98.8468 | 71.0240 | 5020 | 99 | 5057 | 59 | 13 | 22.0339 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8292 | 98.5239 | 99.1363 | 69.4693 | 19290 | 289 | 19284 | 168 | 37 | 22.0238 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8292 | 98.5239 | 99.1363 | 69.4693 | 19290 | 289 | 19284 | 168 | 37 | 22.0238 | |
| dgrover-gatk | SNP | * | map_l125_m0_e0 | * | 98.9327 | 98.9889 | 98.8765 | 77.4655 | 19189 | 196 | 19186 | 218 | 48 | 22.0183 | |
| jli-custom | SNP | tv | map_l100_m2_e0 | het | 99.2133 | 99.1190 | 99.3078 | 65.8320 | 15638 | 139 | 15637 | 109 | 24 | 22.0183 | |
| anovak-vg | SNP | ti | map_l250_m1_e0 | het | 71.0849 | 85.8491 | 60.6538 | 92.0278 | 2548 | 420 | 2542 | 1649 | 363 | 22.0133 | |
| cchapple-custom | SNP | * | map_l150_m1_e0 | * | 96.5908 | 96.7363 | 96.4458 | 77.1687 | 29610 | 999 | 29605 | 1091 | 240 | 21.9982 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 57.4519 | 55.8442 | 59.1549 | 62.6561 | 215 | 170 | 336 | 232 | 51 | 21.9828 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | * | 99.3071 | 98.8520 | 99.7664 | 59.3097 | 73879 | 858 | 73876 | 173 | 38 | 21.9653 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | het | 98.6093 | 97.5384 | 99.7040 | 42.5144 | 13829 | 349 | 13809 | 41 | 9 | 21.9512 | |
| ckim-isaac | SNP | * | map_l100_m0_e0 | * | 74.0949 | 58.9233 | 99.7886 | 67.9602 | 19351 | 13490 | 19354 | 41 | 9 | 21.9512 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.7826 | 85.1485 | 66.6667 | 94.5791 | 86 | 15 | 82 | 41 | 9 | 21.9512 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 72.7828 | 81.3725 | 65.8333 | 95.3952 | 83 | 19 | 79 | 41 | 9 | 21.9512 | |
| hfeng-pmm1 | SNP | * | map_l250_m0_e0 | * | 98.1512 | 98.2201 | 98.0823 | 92.9304 | 2097 | 38 | 2097 | 41 | 9 | 21.9512 | |