PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2901-2950 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 74.7331 | 75.0000 | 74.4681 | 58.4071 | 27 | 9 | 35 | 12 | 12 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 62.0666 | 45.8824 | 95.8904 | 59.6685 | 39 | 46 | 70 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 77.6732 | 71.7391 | 84.6774 | 54.4118 | 66 | 26 | 105 | 19 | 19 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 67.4676 | 51.9231 | 96.2963 | 59.0909 | 27 | 25 | 52 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 79.6906 | 72.0588 | 89.1304 | 56.8075 | 49 | 19 | 82 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 60.0475 | 46.9799 | 83.1858 | 54.4355 | 70 | 79 | 94 | 19 | 19 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 17.0474 | 9.3664 | 94.7368 | 65.0307 | 34 | 329 | 54 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 37.1380 | 22.9618 | 97.0630 | 40.4691 | 583 | 1956 | 1355 | 41 | 41 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 39.8487 | 25.0685 | 97.0961 | 38.8155 | 549 | 1641 | 1304 | 39 | 39 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 37.9488 | 23.6006 | 96.7984 | 42.1136 | 624 | 2020 | 1421 | 47 | 47 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 42.9905 | 27.6680 | 96.3481 | 42.7526 | 490 | 1281 | 1583 | 60 | 60 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 15.0000 | 57.4468 | 0 | 92 | 3 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 88.2353 | 0 | 9 | 0 | 2 | 2 | 100.0000 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 16.6667 | 30.7692 | 0 | 0 | 3 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 85.4239 | 80.6452 | 90.8046 | 75.2137 | 50 | 12 | 158 | 16 | 16 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 66.6667 | 98.7791 | 0 | 2 | 14 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 75.0000 | 98.7441 | 0 | 0 | 6 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 37.5000 | 99.1091 | 0 | 0 | 3 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 48.0410 | 32.1373 | 95.1060 | 47.1096 | 206 | 435 | 583 | 30 | 30 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 66.9909 | 56.2201 | 82.8667 | 28.6733 | 235 | 183 | 1243 | 257 | 257 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 82.2556 | 76.2295 | 89.3162 | 29.0192 | 93 | 29 | 627 | 75 | 75 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 58.9695 | 42.1941 | 97.8873 | 36.0360 | 100 | 137 | 278 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 68.3650 | 71.1864 | 65.7588 | 23.2836 | 42 | 17 | 338 | 176 | 176 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | homalt | 87.7193 | 83.3333 | 92.5926 | 82.0000 | 10 | 2 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | homalt | 77.9540 | 75.7576 | 80.2817 | 77.2436 | 25 | 8 | 57 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | homalt | 78.0829 | 75.7576 | 80.5556 | 78.2477 | 25 | 8 | 58 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e1 | homalt | 77.5608 | 75.7576 | 79.4521 | 78.2090 | 25 | 8 | 58 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | homalt | 87.5912 | 83.3333 | 92.3077 | 87.2549 | 5 | 1 | 12 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | homalt | 84.4720 | 80.0000 | 89.4737 | 80.7107 | 12 | 3 | 34 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | homalt | 84.8138 | 80.0000 | 90.2439 | 81.1060 | 12 | 3 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | homalt | 84.8138 | 80.0000 | 90.2439 | 81.3636 | 12 | 3 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | * | 82.9787 | 75.0000 | 92.8571 | 92.6316 | 6 | 2 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | het | 63.1579 | 50.0000 | 85.7143 | 93.1373 | 2 | 2 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m1_e0 | homalt | 88.0309 | 85.7143 | 90.4762 | 85.3147 | 6 | 1 | 19 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | homalt | 88.5906 | 85.7143 | 91.6667 | 85.6287 | 6 | 1 | 22 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | homalt | 89.5349 | 87.5000 | 91.6667 | 85.8824 | 7 | 1 | 22 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | * | 81.1709 | 76.0000 | 87.0968 | 88.6197 | 133 | 42 | 135 | 20 | 20 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | het | 92.1647 | 91.5663 | 92.7711 | 88.6612 | 76 | 7 | 77 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | homalt | 82.6923 | 91.4894 | 75.4386 | 87.6356 | 43 | 4 | 43 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 99.1736 | 100.0000 | 98.3607 | 83.9895 | 2 | 0 | 60 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0385 | 100.0000 | 98.0952 | 76.5101 | 5 | 0 | 103 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | homalt | 99.6776 | 99.6820 | 99.6732 | 93.5320 | 627 | 2 | 610 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | homalt | 99.7542 | 99.6752 | 99.8333 | 88.3918 | 2455 | 8 | 2396 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | homalt | 99.7746 | 99.7022 | 99.8472 | 89.1514 | 2678 | 8 | 2613 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | homalt | 99.7772 | 99.7057 | 99.8489 | 89.2201 | 2710 | 8 | 2643 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_siren | hetalt | 98.9320 | 98.7654 | 99.0991 | 70.0162 | 80 | 1 | 550 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | SNP | * | segdup | hetalt | 99.3197 | 100.0000 | 98.6486 | 95.3371 | 7 | 0 | 73 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | segdup | homalt | 99.9005 | 99.9348 | 99.8662 | 89.0870 | 10736 | 7 | 10453 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7742 | 100.0000 | 93.7500 | 90.1840 | 1 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.0392 | 100.0000 | 96.1538 | 79.7665 | 1 | 0 | 50 | 2 | 2 | 100.0000 | |