PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2851-2900 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | * | 41.1429 | 26.6667 | 90.0000 | 72.2222 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 78.5714 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | * | 41.1429 | 26.6667 | 90.0000 | 76.1905 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 81.2500 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | * | 41.1429 | 26.6667 | 90.0000 | 76.7442 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 44.4444 | 33.3333 | 66.6667 | 82.3529 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | * | 41.0959 | 27.2727 | 83.3333 | 80.0000 | 3 | 8 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 84.6154 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | * | 41.3793 | 27.2727 | 85.7143 | 78.7879 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 80.0000 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 79.4118 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 44.4444 | 33.3333 | 66.6667 | 81.2500 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | * | 44.1848 | 30.2326 | 82.0513 | 68.0328 | 26 | 60 | 32 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | het | 43.6447 | 30.6122 | 76.0000 | 62.1212 | 15 | 34 | 19 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | homalt | 58.4071 | 42.8571 | 91.6667 | 75.0000 | 9 | 12 | 11 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | * | 64.1368 | 51.0638 | 86.2069 | 84.3243 | 24 | 23 | 25 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | het | 53.1401 | 41.6667 | 73.3333 | 84.5361 | 10 | 14 | 11 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | * | 57.1429 | 50.0000 | 66.6667 | 40.0000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | het | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | func_cds | homalt | 99.1798 | 99.1597 | 99.2000 | 23.7805 | 118 | 1 | 124 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 62.5000 | 47.6190 | 90.9091 | 74.4186 | 40 | 44 | 60 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 88.8955 | 90.5000 | 87.3469 | 59.7701 | 181 | 19 | 214 | 31 | 31 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.3366 | 91.0042 | 93.7086 | 71.1832 | 435 | 43 | 566 | 38 | 38 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.1583 | 92.1965 | 96.2054 | 74.5165 | 319 | 27 | 431 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.8881 | 14.3987 | 91.6667 | 67.0000 | 91 | 541 | 121 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.4672 | 95.4477 | 99.5740 | 49.7805 | 2537 | 121 | 31556 | 135 | 135 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.8200 | 97.9622 | 99.6930 | 47.9840 | 1346 | 28 | 19485 | 60 | 60 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 91.7090 | 85.4430 | 98.9667 | 76.0780 | 270 | 46 | 862 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2328 | 95.1446 | 99.4146 | 48.4901 | 921 | 47 | 11209 | 66 | 66 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 86.4865 | 99.7553 | 0 | 0 | 96 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 69.6394 | 53.9936 | 98.0519 | 57.5172 | 169 | 144 | 302 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 17.6471 | 22.7273 | 0 | 0 | 3 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 85.5305 | 77.7778 | 95.0000 | 91.5966 | 7 | 2 | 19 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5394 | 98.5075 | 98.5714 | 90.5914 | 66 | 1 | 138 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2826 | 99.4949 | 99.0712 | 87.5674 | 197 | 1 | 320 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0179 | 99.5025 | 98.5380 | 88.0795 | 200 | 1 | 337 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0279 | 99.5098 | 98.5507 | 88.2373 | 203 | 1 | 340 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | * | 97.2973 | 100.0000 | 94.7368 | 96.7942 | 24 | 0 | 54 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | het | 96.6667 | 100.0000 | 93.5484 | 96.7876 | 15 | 0 | 29 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | homalt | 98.0392 | 100.0000 | 96.1538 | 96.6013 | 9 | 0 | 25 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.0930 | 97.7273 | 98.4615 | 95.3472 | 43 | 1 | 64 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.4795 | 97.7778 | 97.1831 | 95.5514 | 44 | 1 | 69 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.5232 | 97.8261 | 97.2222 | 95.6311 | 45 | 1 | 70 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | hetalt | 56.8182 | 41.6667 | 89.2857 | 96.7175 | 20 | 28 | 25 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | homalt | 97.3667 | 98.3087 | 96.4427 | 92.5159 | 465 | 8 | 488 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | HG002complexvar | hetalt | 50.4268 | 34.5053 | 93.6293 | 59.7826 | 422 | 801 | 485 | 33 | 33 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | func_cds | * | 88.6076 | 81.3953 | 97.2222 | 32.0755 | 35 | 8 | 35 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | func_cds | hetalt | 57.1429 | 50.0000 | 66.6667 | 62.5000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 45.1634 | 29.5192 | 96.0848 | 46.1217 | 921 | 2199 | 2356 | 96 | 96 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 46.3980 | 31.1475 | 90.9091 | 61.1765 | 19 | 42 | 30 | 3 | 3 | 100.0000 | |