PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28851-28900 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 84.0000 | 96.5612 | 0 | 0 | 21 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 73.3333 | 95.6647 | 0 | 0 | 11 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0959 | 99.3912 | 98.8024 | 75.4321 | 653 | 4 | 660 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9695 | 96.0199 | 97.9381 | 88.9898 | 193 | 8 | 190 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3925 | 99.2718 | 99.5134 | 71.4682 | 818 | 6 | 818 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8282 | 99.7547 | 99.9018 | 44.3519 | 4067 | 10 | 4070 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 87.1106 | 77.9126 | 98.7711 | 74.0431 | 642 | 182 | 643 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | * | 72.3894 | 57.0432 | 99.0315 | 95.5984 | 409 | 308 | 409 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | het | 74.4186 | 59.7510 | 98.6301 | 96.0087 | 288 | 194 | 288 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | * | 73.8487 | 58.8467 | 99.1170 | 95.6820 | 449 | 314 | 449 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | het | 76.0766 | 61.8677 | 98.7578 | 96.0549 | 318 | 196 | 318 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | het | 88.8512 | 80.5007 | 99.1347 | 90.4602 | 1833 | 444 | 1833 | 16 | 4 | 25.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | * | 75.1678 | 61.0909 | 97.6744 | 94.2049 | 168 | 107 | 168 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | het | 77.5330 | 65.1852 | 95.6522 | 95.8633 | 88 | 47 | 88 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 38.9486 | 24.4745 | 95.3216 | 91.4756 | 163 | 503 | 163 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 38.9486 | 24.4745 | 95.3216 | 91.4756 | 163 | 503 | 163 | 8 | 2 | 25.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | * | 91.9974 | 88.3495 | 95.9596 | 87.8378 | 91 | 12 | 95 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | het | 92.5000 | 88.0952 | 97.3684 | 82.6879 | 111 | 15 | 148 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | het | 92.3597 | 87.7863 | 97.4359 | 83.4921 | 115 | 16 | 152 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | het | 91.7507 | 86.6667 | 97.4684 | 83.5588 | 117 | 18 | 154 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3901 | 96.3168 | 98.4877 | 84.2137 | 523 | 20 | 521 | 8 | 2 | 25.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | * | 97.0470 | 95.4839 | 98.6622 | 88.2791 | 296 | 14 | 295 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.7835 | 99.5098 | 98.0676 | 89.3683 | 203 | 1 | 203 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | het | 96.0492 | 95.6294 | 96.4727 | 93.2955 | 547 | 25 | 547 | 20 | 5 | 25.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 78.4458 | 66.0000 | 96.6764 | 83.1355 | 1980 | 1020 | 1978 | 68 | 17 | 25.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 50.0000 | 95.1515 | 0 | 0 | 4 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 42.8571 | 95.2381 | 0 | 0 | 3 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e0 | * | 70.0000 | 77.7778 | 63.6364 | 95.8750 | 21 | 6 | 21 | 12 | 3 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | het | 72.0000 | 90.0000 | 60.0000 | 95.8791 | 18 | 2 | 18 | 12 | 3 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | * | 75.0000 | 88.2353 | 65.2174 | 95.9147 | 15 | 2 | 15 | 8 | 2 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e1 | het | 76.9231 | 93.7500 | 65.2174 | 95.5166 | 15 | 1 | 15 | 8 | 2 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m1_e0 | het | 44.4444 | 66.6667 | 33.3333 | 97.1292 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e0 | het | 44.4444 | 66.6667 | 33.3333 | 97.4895 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | het | 44.4444 | 66.6667 | 33.3333 | 97.5207 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m1_e0 | * | 87.4195 | 92.4528 | 82.9060 | 96.3265 | 98 | 8 | 97 | 20 | 5 | 25.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e0 | * | 88.1641 | 92.9204 | 83.8710 | 96.6505 | 105 | 8 | 104 | 20 | 5 | 25.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | * | 88.2633 | 92.9825 | 84.0000 | 96.7235 | 106 | 8 | 105 | 20 | 5 | 25.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | * | 95.1569 | 95.6522 | 94.6667 | 96.8867 | 44 | 2 | 71 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 33.3333 | 100.0000 | 20.0000 | 91.8033 | 2 | 0 | 1 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4679 | 99.4172 | 99.5187 | 47.0701 | 853 | 5 | 827 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e0 | * | 91.2711 | 90.0302 | 92.5466 | 95.8100 | 298 | 33 | 298 | 24 | 6 | 25.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e1 | * | 91.3242 | 90.0901 | 92.5926 | 95.8878 | 300 | 33 | 300 | 24 | 6 | 25.0000 | |
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | * | 55.8904 | 85.7143 | 41.4634 | 75.3012 | 6 | 1 | 17 | 24 | 6 | 25.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 11.1111 | 75.0000 | 0 | 0 | 1 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 63.8821 | 48.3271 | 94.2029 | 88.6792 | 130 | 139 | 130 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m1_e0 | * | 51.9747 | 35.1703 | 99.5300 | 97.3642 | 2540 | 4682 | 2541 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m1_e0 | het | 55.4141 | 38.4227 | 99.3482 | 97.7302 | 1827 | 2928 | 1829 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | * | 54.0835 | 37.1211 | 99.5918 | 97.3661 | 2927 | 4958 | 2928 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | het | 57.5846 | 40.5275 | 99.4337 | 97.7208 | 2105 | 3089 | 2107 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | * | 54.2324 | 37.2605 | 99.5985 | 97.3745 | 2976 | 5011 | 2977 | 12 | 3 | 25.0000 | |