PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28701-28750 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.6645 | 97.8723 | 97.4576 | 62.7466 | 460 | 10 | 460 | 12 | 3 | 25.0000 | |
| ndellapenna-hhga | SNP | * | tech_badpromoters | * | 98.4227 | 99.3631 | 97.5000 | 50.3106 | 156 | 1 | 156 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.3649 | 84.9741 | 98.7952 | 90.6820 | 328 | 58 | 328 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3823 | 95.3945 | 99.4547 | 79.4362 | 6566 | 317 | 6566 | 36 | 9 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | het | 97.2591 | 96.5928 | 97.9346 | 88.6168 | 567 | 20 | 569 | 12 | 3 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | het | 92.4528 | 92.4528 | 92.4528 | 97.6318 | 49 | 4 | 49 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | map_siren | hetalt | 93.4218 | 89.0688 | 98.2222 | 87.9936 | 220 | 27 | 221 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8687 | 99.8426 | 99.8949 | 39.6597 | 11415 | 18 | 11408 | 12 | 3 | 25.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8665 | 99.8517 | 99.8813 | 39.6598 | 6734 | 10 | 6732 | 8 | 2 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | func_cds | * | 99.9199 | 99.9314 | 99.9085 | 29.6249 | 4368 | 3 | 4367 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | func_cds | het | 99.8871 | 99.9247 | 99.8495 | 30.5098 | 2655 | 2 | 2654 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.7381 | 99.7754 | 99.7008 | 54.7087 | 1333 | 3 | 1333 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.6495 | 99.7661 | 99.5333 | 55.1309 | 853 | 2 | 853 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8719 | 99.8294 | 99.9145 | 39.6596 | 4681 | 8 | 4676 | 4 | 1 | 25.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 82.9932 | 80.2632 | 85.9155 | 91.4458 | 122 | 30 | 122 | 20 | 5 | 25.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 60.0000 | 60.0000 | 97.1510 | 6 | 4 | 6 | 4 | 1 | 25.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.0343 | 69.6970 | 78.9474 | 95.0607 | 46 | 20 | 45 | 12 | 3 | 25.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.3675 | 98.4593 | 98.2759 | 68.0074 | 1342 | 21 | 1368 | 24 | 6 | 25.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3771 | 99.1429 | 99.6124 | 57.9633 | 1041 | 9 | 1028 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.5100 | 61.9048 | 87.5000 | 94.9126 | 26 | 16 | 28 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.0851 | 59.2593 | 80.0000 | 96.0239 | 16 | 11 | 16 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.0241 | 77.2727 | 82.9787 | 93.9040 | 51 | 15 | 39 | 8 | 2 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | het | 95.8290 | 92.1159 | 99.8541 | 75.2192 | 2734 | 234 | 2737 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e0 | het | 96.1263 | 92.6552 | 99.8676 | 76.8996 | 3015 | 239 | 3018 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e1 | het | 96.1485 | 92.6948 | 99.8695 | 77.1012 | 3058 | 241 | 3061 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | * | map_siren | * | 98.6998 | 98.2726 | 99.1307 | 80.1633 | 7282 | 128 | 7298 | 64 | 16 | 25.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | het | 91.6263 | 93.5897 | 89.7436 | 94.0321 | 73 | 5 | 70 | 8 | 2 | 25.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | * | 98.1974 | 97.7984 | 98.5998 | 82.9317 | 844 | 19 | 845 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | * | 97.7583 | 97.2106 | 98.3122 | 87.0161 | 697 | 20 | 699 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8940 | 97.3788 | 98.4148 | 87.6287 | 743 | 20 | 745 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | het | 96.4143 | 96.0317 | 96.8000 | 86.3983 | 121 | 5 | 121 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e0 | het | 95.7529 | 94.6565 | 96.8750 | 86.7632 | 124 | 7 | 124 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e1 | het | 95.8801 | 94.8148 | 96.9697 | 86.5990 | 128 | 7 | 128 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | het | 97.4729 | 96.4286 | 98.5401 | 83.9390 | 270 | 10 | 270 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.6866 | 94.7447 | 98.7097 | 85.9283 | 631 | 35 | 612 | 8 | 2 | 25.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.6866 | 94.7447 | 98.7097 | 85.9283 | 631 | 35 | 612 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 89.8757 | 95.8333 | 84.6154 | 94.4622 | 46 | 2 | 44 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 90.4556 | 96.0784 | 85.4545 | 94.3123 | 49 | 2 | 47 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.7337 | 96.8858 | 98.5965 | 88.2183 | 280 | 9 | 281 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | * | 97.0530 | 95.7364 | 98.4064 | 83.5733 | 247 | 11 | 247 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | het | 97.2332 | 97.6190 | 96.8504 | 86.2256 | 123 | 3 | 123 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | * | 96.9231 | 95.4545 | 98.4375 | 84.3807 | 252 | 12 | 252 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9466 | 96.9466 | 96.9466 | 86.8606 | 127 | 4 | 127 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e1 | * | 96.8577 | 95.2727 | 98.4962 | 84.2230 | 262 | 13 | 262 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0370 | 97.0370 | 97.0370 | 86.7257 | 131 | 4 | 131 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7564 | 96.8254 | 98.7055 | 66.0440 | 610 | 20 | 610 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | * | 99.1501 | 99.0557 | 99.2446 | 94.2109 | 1049 | 10 | 1051 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.3126 | 96.8244 | 99.8472 | 79.3514 | 10458 | 343 | 10458 | 16 | 4 | 25.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.4660 | 95.2782 | 99.7566 | 78.6987 | 6558 | 325 | 6558 | 16 | 4 | 25.0000 | |
| hfeng-pmm1 | SNP | * | map_l100_m2_e0 | het | 99.4228 | 99.1250 | 99.7224 | 65.3363 | 45993 | 406 | 45982 | 128 | 32 | 25.0000 | |