PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28551-28600 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | * | tech_badpromoters | * | 98.0932 | 98.7261 | 97.4684 | 50.9317 | 155 | 2 | 154 | 4 | 1 | 25.0000 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4978 | 99.5967 | 99.3992 | 57.0007 | 17779 | 72 | 17867 | 108 | 27 | 25.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 30.4348 | 95.1983 | 0 | 0 | 7 | 16 | 4 | 25.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 73.3333 | 98.0645 | 0 | 0 | 11 | 4 | 1 | 25.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 95.0000 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8597 | 99.9065 | 99.8129 | 76.8740 | 2136 | 2 | 2134 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8282 | 99.7547 | 99.9018 | 44.2986 | 4067 | 10 | 4070 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2107 | 98.8095 | 97.6190 | 79.0524 | 166 | 2 | 164 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8273 | 99.7901 | 99.8645 | 55.6157 | 14739 | 31 | 14740 | 20 | 5 | 25.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1373 | 95.7265 | 96.5517 | 91.3883 | 112 | 5 | 112 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0000 | 95.2381 | 96.7742 | 91.7278 | 120 | 6 | 120 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | * | 95.6522 | 94.5312 | 96.8000 | 91.8936 | 121 | 7 | 121 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3668 | 97.7064 | 99.0361 | 85.6897 | 426 | 10 | 411 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4408 | 99.3541 | 99.5277 | 74.9889 | 1692 | 11 | 1686 | 8 | 2 | 25.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | * | 96.6727 | 96.2651 | 97.0838 | 86.5742 | 799 | 31 | 799 | 24 | 6 | 25.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | * | 95.4459 | 94.7269 | 96.1759 | 90.8774 | 503 | 28 | 503 | 20 | 5 | 25.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8470 | 99.8221 | 99.8718 | 54.9751 | 6173 | 11 | 6232 | 8 | 2 | 25.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.8231 | 99.8474 | 99.7988 | 56.7435 | 3925 | 6 | 3969 | 8 | 2 | 25.0000 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e1 | het | 44.3378 | 34.4262 | 62.2642 | 83.5913 | 21 | 40 | 33 | 20 | 5 | 25.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m0_e0 | * | 72.0000 | 75.0000 | 69.2308 | 92.6966 | 6 | 2 | 9 | 4 | 1 | 25.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m0_e0 | het | 63.8298 | 75.0000 | 55.5556 | 92.7419 | 3 | 1 | 5 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8362 | 99.8597 | 99.8128 | 76.4258 | 2135 | 3 | 2133 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3977 | 98.8829 | 99.9179 | 55.5579 | 14605 | 165 | 14609 | 12 | 3 | 25.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m1_e0 | het | 91.9355 | 90.4762 | 93.4426 | 91.7344 | 114 | 12 | 114 | 8 | 2 | 25.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 91.8288 | 90.0763 | 93.6508 | 91.9796 | 118 | 13 | 118 | 8 | 2 | 25.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 92.0981 | 90.3704 | 93.8931 | 91.8176 | 122 | 13 | 123 | 8 | 2 | 25.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_siren | * | 94.9597 | 92.5344 | 97.5155 | 86.4857 | 471 | 38 | 471 | 12 | 3 | 25.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.8389 | 91.6667 | 96.1165 | 90.2370 | 99 | 9 | 99 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | * | 91.5949 | 88.3721 | 95.0617 | 93.1761 | 76 | 10 | 77 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.9948 | 94.8276 | 99.2634 | 69.4944 | 440 | 24 | 539 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | * | 40.2806 | 25.2386 | 99.7022 | 94.5086 | 8039 | 23813 | 8036 | 24 | 6 | 25.0000 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | het | 43.4711 | 27.8051 | 99.5729 | 95.1282 | 5598 | 14535 | 5595 | 24 | 6 | 25.0000 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | * | 40.4494 | 25.3710 | 99.7071 | 94.4964 | 8172 | 24038 | 8169 | 24 | 6 | 25.0000 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | het | 43.6280 | 27.9330 | 99.5796 | 95.1225 | 5688 | 14675 | 5685 | 24 | 6 | 25.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.7738 | 97.6852 | 97.8626 | 87.3723 | 1266 | 30 | 1282 | 28 | 7 | 25.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e0 | * | 33.5713 | 20.1877 | 99.6059 | 98.2299 | 1011 | 3997 | 1011 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e0 | het | 35.4961 | 21.6042 | 99.4342 | 98.4524 | 703 | 2551 | 703 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | * | 33.6335 | 20.2325 | 99.6120 | 98.2384 | 1027 | 4049 | 1027 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | het | 35.5489 | 21.6429 | 99.4429 | 98.4616 | 714 | 2585 | 714 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0494 | 98.1771 | 97.9221 | 86.1908 | 377 | 7 | 377 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | D1_5 | segdup | * | 99.2297 | 99.1840 | 99.2754 | 94.8823 | 1094 | 9 | 1096 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 86.7925 | 88.4615 | 85.1852 | 96.0641 | 23 | 3 | 23 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 86.7925 | 88.4615 | 85.1852 | 96.0813 | 23 | 3 | 23 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.9972 | 95.6522 | 98.3806 | 89.7744 | 484 | 22 | 486 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.8719 | 95.3757 | 98.4158 | 90.8249 | 495 | 24 | 497 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 96.8450 | 95.2919 | 98.4496 | 90.8802 | 506 | 25 | 508 | 8 | 2 | 25.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2973 | 98.6962 | 99.9057 | 48.2245 | 4239 | 56 | 4239 | 4 | 1 | 25.0000 | |
| anovak-vg | INDEL | C6_15 | HG002complexvar | * | 55.5556 | 100.0000 | 38.4615 | 87.1287 | 4 | 0 | 10 | 16 | 4 | 25.0000 | |
| anovak-vg | INDEL | C6_15 | HG002complexvar | het | 50.0000 | 100.0000 | 33.3333 | 85.8824 | 4 | 0 | 8 | 16 | 4 | 25.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 20.8955 | 13.2075 | 50.0000 | 55.5556 | 7 | 46 | 8 | 8 | 2 | 25.0000 | |