PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28351-28400 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | * | 97.2788 | 97.1655 | 97.3923 | 98.8463 | 857 | 25 | 859 | 23 | 6 | 26.0870 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 94.1021 | 89.2612 | 99.4983 | 58.0297 | 9085 | 1093 | 9122 | 46 | 12 | 26.0870 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | het | 80.7151 | 96.9697 | 69.1275 | 96.5865 | 64 | 2 | 103 | 46 | 12 | 26.0870 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | het | 80.7151 | 96.9697 | 69.1275 | 96.6682 | 64 | 2 | 103 | 46 | 12 | 26.0870 | |
| asubramanian-gatk | SNP | * | map_l100_m1_e0 | * | 60.2018 | 43.0908 | 99.8527 | 84.6729 | 31199 | 41204 | 31193 | 46 | 12 | 26.0870 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9777 | 98.0072 | 97.9483 | 86.5329 | 1082 | 22 | 1098 | 23 | 6 | 26.0870 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e0 | * | 96.7549 | 96.6270 | 96.8830 | 81.7123 | 10972 | 383 | 10972 | 353 | 92 | 26.0623 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | * | 97.9194 | 99.0744 | 96.7911 | 45.9764 | 25583 | 239 | 25699 | 852 | 222 | 26.0563 | |
| gduggal-bwaplat | SNP | * | map_siren | * | 90.0933 | 82.3317 | 99.4705 | 71.0074 | 120392 | 25836 | 120427 | 641 | 167 | 26.0530 | |
| anovak-vg | SNP | ti | map_l100_m0_e0 | het | 78.0640 | 88.2071 | 70.0131 | 76.8266 | 12334 | 1649 | 12260 | 5251 | 1367 | 26.0331 | |
| anovak-vg | SNP | * | segdup | het | 97.2290 | 97.3206 | 97.1375 | 93.7111 | 16853 | 464 | 16696 | 492 | 128 | 26.0163 | |
| ltrigg-rtg1 | SNP | * | HG002complexvar | het | 99.8148 | 99.6788 | 99.9511 | 18.4181 | 464005 | 1495 | 464235 | 227 | 59 | 25.9912 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e1 | * | 96.7832 | 96.6528 | 96.9140 | 81.7370 | 11117 | 385 | 11117 | 354 | 92 | 25.9887 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | het | 84.5932 | 97.4619 | 74.7264 | 88.6901 | 576 | 15 | 751 | 254 | 66 | 25.9843 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 71.8249 | 74.6024 | 69.2468 | 69.8343 | 1595 | 543 | 1664 | 739 | 192 | 25.9811 | |
| jpowers-varprowl | SNP | tv | map_l150_m0_e0 | het | 93.9990 | 95.0405 | 92.9800 | 87.0071 | 2702 | 141 | 2702 | 204 | 53 | 25.9804 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 23.8482 | 94.6807 | 0 | 1 | 88 | 281 | 73 | 25.9786 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 23.8482 | 94.6807 | 0 | 1 | 88 | 281 | 73 | 25.9786 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 69.0871 | 73.4873 | 65.1842 | 73.1680 | 923 | 333 | 938 | 501 | 130 | 25.9481 | |
| jpowers-varprowl | SNP | tv | map_l150_m0_e0 | * | 95.1094 | 95.2803 | 94.9391 | 85.9113 | 3977 | 197 | 3977 | 212 | 55 | 25.9434 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.3384 | 99.1260 | 97.5632 | 72.9162 | 2155 | 19 | 2162 | 54 | 14 | 25.9259 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4656 | 99.3773 | 99.5540 | 78.3693 | 6064 | 38 | 6027 | 27 | 7 | 25.9259 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | * | 95.4029 | 95.8569 | 94.9533 | 91.2223 | 509 | 22 | 508 | 27 | 7 | 25.9259 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 88.4623 | 92.1212 | 85.0829 | 92.3011 | 152 | 13 | 154 | 27 | 7 | 25.9259 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 84.1308 | 76.7376 | 93.1005 | 65.8125 | 1082 | 328 | 1093 | 81 | 21 | 25.9259 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | * | 60.9821 | 43.8984 | 99.8339 | 85.3165 | 32469 | 41495 | 32463 | 54 | 14 | 25.9259 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | * | 61.2013 | 44.1254 | 99.8365 | 85.2564 | 32978 | 41759 | 32972 | 54 | 14 | 25.9259 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m1_e0 | het | 98.0207 | 98.2630 | 97.7796 | 82.5011 | 1188 | 21 | 1189 | 27 | 7 | 25.9259 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | het | 98.0946 | 98.3280 | 97.8622 | 83.1891 | 1235 | 21 | 1236 | 27 | 7 | 25.9259 | |
| ckim-isaac | SNP | tv | map_l125_m1_e0 | het | 74.2974 | 59.2633 | 99.5522 | 74.3164 | 6001 | 4125 | 6003 | 27 | 7 | 25.9259 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | het | 81.4896 | 95.5707 | 71.0250 | 91.1456 | 561 | 26 | 880 | 359 | 93 | 25.9053 | |
| dgrover-gatk | SNP | * | map_l250_m2_e0 | * | 98.4387 | 98.3513 | 98.5262 | 90.2982 | 7755 | 130 | 7755 | 116 | 30 | 25.8621 | |
| jli-custom | SNP | tv | map_l100_m2_e0 | * | 99.4221 | 99.3089 | 99.5355 | 64.2177 | 24860 | 173 | 24859 | 116 | 30 | 25.8621 | |
| hfeng-pmm1 | SNP | ti | map_l125_m0_e0 | het | 99.0169 | 98.7414 | 99.2940 | 75.6362 | 8159 | 104 | 8157 | 58 | 15 | 25.8621 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | * | 93.4753 | 91.3274 | 95.7267 | 83.9230 | 3275 | 311 | 3293 | 147 | 38 | 25.8503 | |
| jpowers-varprowl | SNP | tv | map_l125_m0_e0 | * | 95.8974 | 95.8830 | 95.9119 | 81.8721 | 6358 | 273 | 6358 | 271 | 70 | 25.8303 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 82.2027 | 72.0883 | 95.6186 | 70.2749 | 5323 | 2061 | 5325 | 244 | 63 | 25.8197 | |
| jli-custom | INDEL | I16_PLUS | * | het | 95.1311 | 91.7586 | 98.7610 | 68.1314 | 2494 | 224 | 2471 | 31 | 8 | 25.8065 | |
| ckim-isaac | SNP | tv | map_l100_m1_e0 | het | 78.9057 | 65.2916 | 99.6931 | 67.8118 | 10066 | 5351 | 10069 | 31 | 8 | 25.8065 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5637 | 96.6141 | 98.5322 | 74.8332 | 2083 | 73 | 2081 | 31 | 8 | 25.8065 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | * | 81.1188 | 76.8380 | 85.9047 | 77.6345 | 35901 | 10822 | 35830 | 5879 | 1516 | 25.7867 | |
| cchapple-custom | INDEL | * | map_l100_m2_e1 | het | 95.2316 | 96.5856 | 93.9150 | 85.7416 | 2263 | 80 | 2454 | 159 | 41 | 25.7862 | |
| gduggal-bwavard | INDEL | * | map_l100_m0_e0 | * | 89.2130 | 93.9219 | 84.9537 | 89.1607 | 1468 | 95 | 1468 | 260 | 67 | 25.7692 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | het | 90.3770 | 98.4270 | 83.5443 | 91.2553 | 1314 | 21 | 1320 | 260 | 67 | 25.7692 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 91.3850 | 94.7826 | 88.2225 | 88.3133 | 2507 | 138 | 2442 | 326 | 84 | 25.7669 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4435 | 99.1224 | 99.7666 | 66.9356 | 28012 | 248 | 28207 | 66 | 17 | 25.7576 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | het | 83.5667 | 80.4979 | 86.8787 | 94.5219 | 388 | 94 | 437 | 66 | 17 | 25.7576 | |
| ciseli-custom | SNP | * | map_l125_m1_e0 | * | 80.8628 | 76.5085 | 85.7426 | 76.0516 | 34679 | 10648 | 34610 | 5755 | 1482 | 25.7515 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | * | 81.1911 | 76.9289 | 85.9532 | 77.6472 | 36312 | 10890 | 36237 | 5922 | 1525 | 25.7514 | |
| astatham-gatk | INDEL | * | map_l100_m2_e0 | * | 96.5801 | 95.1530 | 98.0507 | 86.7138 | 3514 | 179 | 3521 | 70 | 18 | 25.7143 | |