PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27501-27550 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | tv | map_l125_m2_e0 | * | 70.8343 | 54.9397 | 99.6700 | 73.8494 | 9059 | 7430 | 9061 | 30 | 9 | 30.0000 | |
| ckim-isaac | SNP | tv | map_l125_m2_e1 | * | 70.9236 | 55.0459 | 99.6739 | 73.8556 | 9169 | 7488 | 9171 | 30 | 9 | 30.0000 | |
| ckim-isaac | SNP | tv | map_l150_m1_e0 | het | 71.1670 | 55.3988 | 99.4831 | 79.3620 | 3848 | 3098 | 3849 | 20 | 6 | 30.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | het | 83.0777 | 72.2504 | 97.7221 | 87.1675 | 427 | 164 | 429 | 10 | 3 | 30.0000 | |
| ghariani-varprowl | INDEL | * | map_l150_m1_e0 | homalt | 94.7603 | 91.9913 | 97.7011 | 86.5533 | 425 | 37 | 425 | 10 | 3 | 30.0000 | |
| ghariani-varprowl | INDEL | * | map_l150_m2_e0 | homalt | 94.8608 | 92.0998 | 97.7925 | 87.5618 | 443 | 38 | 443 | 10 | 3 | 30.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | * | 91.6300 | 92.0354 | 91.2281 | 96.5990 | 104 | 9 | 104 | 10 | 3 | 30.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | * | 91.7031 | 92.1053 | 91.3043 | 96.6628 | 105 | 9 | 105 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2169 | 98.7151 | 99.7238 | 50.4244 | 3611 | 47 | 3611 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | * | 95.6954 | 94.7541 | 96.6555 | 94.7800 | 289 | 16 | 289 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | * | 96.0366 | 95.1662 | 96.9231 | 95.1304 | 315 | 16 | 315 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | * | 96.0606 | 95.1952 | 96.9419 | 95.2325 | 317 | 16 | 317 | 10 | 3 | 30.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | * | 95.0715 | 96.4516 | 93.7304 | 91.7974 | 299 | 11 | 299 | 20 | 6 | 30.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2061 | 95.1523 | 99.3506 | 63.9597 | 1531 | 78 | 1530 | 10 | 3 | 30.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 39.0387 | 28.0303 | 64.2857 | 93.0175 | 37 | 95 | 36 | 20 | 6 | 30.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7127 | 99.6993 | 99.7261 | 53.8549 | 3647 | 11 | 3641 | 10 | 3 | 30.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 55.1724 | 50.0000 | 61.5385 | 96.2590 | 16 | 16 | 16 | 10 | 3 | 30.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9814 | 98.5171 | 99.4501 | 63.2766 | 5514 | 83 | 5426 | 30 | 9 | 30.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.7707 | 96.6667 | 96.8750 | 65.8120 | 319 | 11 | 310 | 10 | 3 | 30.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | * | 97.8909 | 96.5591 | 99.2598 | 80.3577 | 1347 | 48 | 1341 | 10 | 3 | 30.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8016 | 99.6534 | 99.9503 | 52.1900 | 20129 | 70 | 20107 | 10 | 3 | 30.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | * | * | 98.7212 | 100.0000 | 97.4747 | 93.7931 | 7 | 0 | 386 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | homalt | 99.5118 | 99.7741 | 99.2509 | 78.2644 | 1325 | 3 | 1325 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.0766 | 95.8333 | 81.4815 | 95.2590 | 46 | 2 | 44 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 88.7476 | 96.0784 | 82.4561 | 95.1199 | 49 | 2 | 47 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | * | 98.6285 | 99.0792 | 98.1818 | 85.0543 | 538 | 5 | 540 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.9622 | 96.2373 | 99.7500 | 82.0192 | 3990 | 156 | 3990 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | homalt | 99.5118 | 99.7741 | 99.2509 | 78.3981 | 1325 | 3 | 1325 | 10 | 3 | 30.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3101 | 98.8739 | 97.7528 | 75.8415 | 439 | 5 | 435 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6000 | 96.8254 | 98.3871 | 66.3227 | 610 | 20 | 610 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m1_e0 | * | 98.9903 | 98.7304 | 99.2515 | 81.3277 | 1322 | 17 | 1326 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9747 | 98.6842 | 99.2669 | 82.6860 | 1350 | 18 | 1354 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.9946 | 98.7097 | 99.2811 | 82.7868 | 1377 | 18 | 1381 | 10 | 3 | 30.0000 | |
| jli-custom | INDEL | D1_5 | HG002complexvar | het | 99.7322 | 99.5618 | 99.9033 | 54.7904 | 20674 | 91 | 20667 | 20 | 6 | 30.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 97.9839 | 97.9839 | 97.9839 | 87.4399 | 486 | 10 | 486 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.1684 | 91.4205 | 99.2366 | 87.1594 | 1300 | 122 | 1300 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8613 | 87.6232 | 98.7654 | 88.2880 | 800 | 113 | 800 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.1373 | 96.5750 | 99.7509 | 81.8576 | 4004 | 142 | 4004 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.2324 | 94.9716 | 99.6035 | 82.0153 | 2512 | 133 | 2512 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | homalt | 99.4741 | 99.6988 | 99.2504 | 78.1634 | 1324 | 4 | 1324 | 10 | 3 | 30.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 30.6087 | 21.6216 | 52.3810 | 47.5000 | 8 | 29 | 11 | 10 | 3 | 30.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m0_e0 | het | 45.5285 | 46.6667 | 44.4444 | 98.7198 | 7 | 8 | 8 | 10 | 3 | 30.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.0742 | 99.2047 | 98.9440 | 72.8770 | 1871 | 15 | 1874 | 20 | 6 | 30.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 87.2093 | 86.2069 | 88.2353 | 95.4955 | 75 | 12 | 75 | 10 | 3 | 30.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.6882 | 97.7707 | 97.6057 | 78.5372 | 1228 | 28 | 1223 | 30 | 9 | 30.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | * | 98.5355 | 98.8950 | 98.1785 | 84.8343 | 537 | 6 | 539 | 10 | 3 | 30.0000 | |
| cchapple-custom | INDEL | * | segdup | het | 99.0552 | 98.7040 | 99.4090 | 95.0259 | 1447 | 19 | 1682 | 10 | 3 | 30.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | het | 97.3931 | 96.8880 | 97.9036 | 87.3876 | 467 | 15 | 467 | 10 | 3 | 30.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5562 | 97.0817 | 98.0354 | 87.9212 | 499 | 15 | 499 | 10 | 3 | 30.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e1 | het | 97.4952 | 96.9349 | 98.0620 | 87.9355 | 506 | 16 | 506 | 10 | 3 | 30.0000 | |