PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27451-27500 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | ti | map_l100_m2_e0 | * | 98.2207 | 97.7472 | 98.6987 | 70.3702 | 47858 | 1103 | 47860 | 631 | 192 | 30.4279 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 77.7807 | 65.3066 | 96.1451 | 67.6686 | 2545 | 1352 | 2544 | 102 | 31 | 30.3922 | |
| gduggal-bwaplat | INDEL | I6_15 | * | het | 84.1633 | 73.9659 | 97.6222 | 67.9845 | 7421 | 2612 | 7431 | 181 | 55 | 30.3867 | |
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | het | 76.9732 | 62.9193 | 99.1113 | 88.0688 | 8798 | 5185 | 8810 | 79 | 24 | 30.3797 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | * | 97.9068 | 97.5541 | 98.2622 | 89.4468 | 4467 | 112 | 4467 | 79 | 24 | 30.3797 | |
| ltrigg-rtg2 | SNP | tv | HG002complexvar | het | 99.8062 | 99.7174 | 99.8951 | 21.1944 | 150308 | 426 | 150523 | 158 | 48 | 30.3797 | |
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.7595 | 98.7696 | 96.7698 | 62.5065 | 27615 | 344 | 27711 | 925 | 281 | 30.3784 | |
| gduggal-snapfb | INDEL | I1_5 | * | * | 94.6996 | 95.8769 | 93.5508 | 58.0186 | 144452 | 6212 | 145507 | 10031 | 3046 | 30.3659 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | * | 98.7318 | 97.7074 | 99.7779 | 38.3623 | 25230 | 592 | 25160 | 56 | 17 | 30.3571 | |
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | * | 84.8673 | 92.3767 | 78.4870 | 90.4884 | 1236 | 102 | 1660 | 455 | 138 | 30.3297 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 50.1059 | 37.3855 | 75.9467 | 75.6447 | 1224 | 2050 | 1083 | 343 | 104 | 30.3207 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6389 | 97.8193 | 99.4723 | 75.3576 | 6280 | 140 | 6221 | 33 | 10 | 30.3030 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6389 | 97.8193 | 99.4723 | 75.3576 | 6280 | 140 | 6221 | 33 | 10 | 30.3030 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 76.2347 | 73.3333 | 79.3750 | 87.3317 | 121 | 44 | 127 | 33 | 10 | 30.3030 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.4659 | 95.6210 | 97.3258 | 79.6370 | 1201 | 55 | 1201 | 33 | 10 | 30.3030 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 8.0617 | 4.6278 | 31.2500 | 60.9756 | 23 | 474 | 30 | 66 | 20 | 30.3030 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 54.0473 | 88.5714 | 38.8889 | 81.0526 | 31 | 4 | 21 | 33 | 10 | 30.3030 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | * | 98.2264 | 97.7569 | 98.7004 | 70.3802 | 48375 | 1110 | 48377 | 637 | 193 | 30.2983 | |
| jli-custom | SNP | ti | map_l125_m2_e0 | het | 99.1286 | 98.8398 | 99.4191 | 70.5575 | 18657 | 219 | 18655 | 109 | 33 | 30.2752 | |
| jli-custom | SNP | ti | map_l125_m2_e1 | het | 99.1383 | 98.8526 | 99.4256 | 70.6228 | 18868 | 219 | 18866 | 109 | 33 | 30.2752 | |
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | * | 90.4000 | 93.9859 | 87.0777 | 93.2660 | 1469 | 94 | 1469 | 218 | 66 | 30.2752 | |
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | * | 75.1104 | 60.3648 | 99.3885 | 86.1772 | 17708 | 11627 | 17715 | 109 | 33 | 30.2752 | |
| jli-custom | SNP | * | map_l150_m2_e1 | het | 98.8617 | 98.5267 | 99.1989 | 74.7124 | 20063 | 300 | 20060 | 162 | 49 | 30.2469 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.8551 | 98.9247 | 82.3088 | 71.2571 | 1748 | 19 | 1754 | 377 | 114 | 30.2387 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 79.1180 | 67.8700 | 94.8349 | 76.6136 | 8498 | 4023 | 8501 | 463 | 140 | 30.2376 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.7010 | 93.8654 | 97.6098 | 62.3325 | 1729 | 113 | 1756 | 43 | 13 | 30.2326 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 77.7513 | 65.3494 | 95.9630 | 64.1921 | 2282 | 1210 | 2282 | 96 | 29 | 30.2083 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.1492 | 94.4109 | 91.9207 | 73.5164 | 625 | 37 | 603 | 53 | 16 | 30.1887 | |
| gduggal-bwafb | SNP | * | map_l150_m0_e0 | het | 97.7971 | 97.8463 | 97.7479 | 82.8433 | 7769 | 171 | 7769 | 179 | 54 | 30.1676 | |
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | * | 98.8483 | 98.7506 | 98.9461 | 70.2347 | 21499 | 272 | 21500 | 229 | 69 | 30.1310 | |
| jli-custom | SNP | ti | map_l100_m2_e0 | * | 99.4978 | 99.3362 | 99.6598 | 62.5143 | 48636 | 325 | 48634 | 166 | 50 | 30.1205 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.8924 | 97.1669 | 98.6287 | 80.6797 | 6688 | 195 | 6689 | 93 | 28 | 30.1075 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.3899 | 98.2619 | 98.5182 | 61.1046 | 6897 | 122 | 6848 | 103 | 31 | 30.0971 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | * | 75.8315 | 61.2995 | 99.3947 | 87.0105 | 18548 | 11710 | 18555 | 113 | 34 | 30.0885 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.5535 | 97.1688 | 93.9910 | 58.3407 | 3535 | 103 | 3535 | 226 | 68 | 30.0885 | |
| egarrison-hhga | SNP | * | segdup | * | 99.6030 | 99.6793 | 99.5269 | 89.4388 | 27977 | 90 | 27977 | 133 | 40 | 30.0752 | |
| hfeng-pmm1 | SNP | * | map_l100_m2_e0 | * | 99.5855 | 99.3929 | 99.7787 | 64.6417 | 73515 | 449 | 73504 | 163 | 49 | 30.0613 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | het | 86.8689 | 77.3061 | 99.1314 | 82.6916 | 23147 | 6795 | 23169 | 203 | 61 | 30.0493 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 78.1600 | 65.8800 | 96.0669 | 59.7785 | 3908 | 2024 | 3908 | 160 | 48 | 30.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e1 | * | 69.5020 | 53.4244 | 99.4224 | 91.0196 | 17208 | 15002 | 17212 | 100 | 30 | 30.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 93.4119 | 88.3559 | 99.0817 | 66.5438 | 2155 | 284 | 2158 | 20 | 6 | 30.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.3698 | 88.6709 | 98.5945 | 70.7743 | 1401 | 179 | 1403 | 20 | 6 | 30.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | het | 87.1494 | 77.7546 | 99.1265 | 83.6970 | 23810 | 6812 | 23832 | 210 | 63 | 30.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 61.5385 | 94.3355 | 0 | 0 | 16 | 10 | 3 | 30.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.3333 | 66.6667 | 72.2222 | 89.6254 | 34 | 17 | 26 | 10 | 3 | 30.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | * | 91.6667 | 90.1639 | 93.2203 | 95.5752 | 275 | 30 | 275 | 20 | 6 | 30.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m0_e0 | het | 97.0550 | 98.0198 | 96.1089 | 90.1983 | 198 | 4 | 247 | 10 | 3 | 30.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.5655 | 97.5492 | 99.6032 | 43.6746 | 2229 | 56 | 2510 | 10 | 3 | 30.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 56.5401 | 41.8750 | 87.0130 | 90.2900 | 67 | 93 | 67 | 10 | 3 | 30.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m0_e0 | * | 97.8809 | 97.7823 | 97.9798 | 88.1437 | 485 | 11 | 485 | 10 | 3 | 30.0000 | |