PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26951-27000 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.6667 | 100.0000 | 97.3684 | 84.9604 | 114 | 0 | 111 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.2310 | 99.3884 | 99.0741 | 82.8662 | 325 | 2 | 321 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.1150 | 99.1202 | 99.1098 | 84.2670 | 338 | 3 | 334 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m0_e0 | * | 95.9251 | 93.7500 | 98.2036 | 86.8297 | 165 | 11 | 164 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2366 | 100.0000 | 98.4848 | 86.5398 | 198 | 0 | 195 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 88.2181 | 201 | 0 | 198 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2629 | 100.0000 | 98.5366 | 88.2723 | 204 | 0 | 202 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | * | 94.1888 | 91.5094 | 97.0297 | 93.4755 | 97 | 9 | 98 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | * | 94.5577 | 92.0354 | 97.2222 | 94.2614 | 104 | 9 | 105 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | * | 94.6067 | 92.1053 | 97.2477 | 94.4160 | 105 | 9 | 106 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | segdup | * | 98.9565 | 98.7724 | 99.1412 | 93.0766 | 1046 | 13 | 1039 | 9 | 3 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2788 | 89.2617 | 97.6744 | 69.3587 | 133 | 16 | 126 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | het | 95.3087 | 93.0070 | 97.7273 | 76.9231 | 133 | 10 | 129 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | SNP | * | map_l250_m1_e0 | het | 96.4484 | 93.3754 | 99.7305 | 78.8925 | 4440 | 315 | 4440 | 12 | 4 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 87.5000 | 84.8485 | 90.3226 | 93.7876 | 28 | 5 | 28 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 82.3529 | 82.3529 | 82.3529 | 95.1429 | 14 | 3 | 14 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 75.8621 | 73.3333 | 78.5714 | 96.3731 | 11 | 4 | 11 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.8085 | 6 | 3 | 6 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.2675 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 80.0000 | 80.0000 | 80.0000 | 96.6292 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.7078 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.0060 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 86.7925 | 85.1852 | 88.4615 | 96.5517 | 23 | 4 | 23 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 81.2500 | 81.2500 | 81.2500 | 96.9112 | 13 | 3 | 13 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3451 | 99.1719 | 99.5189 | 81.7458 | 6826 | 57 | 6826 | 33 | 11 | 33.3333 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7565 | 99.6672 | 99.8461 | 33.6736 | 3893 | 13 | 3892 | 6 | 2 | 33.3333 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6201 | 99.5533 | 99.6870 | 54.4597 | 6686 | 30 | 6688 | 21 | 7 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0619 | 99.2481 | 98.8764 | 82.8296 | 264 | 2 | 264 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.9957 | 96.5812 | 97.4138 | 92.7318 | 113 | 4 | 113 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.1240 | 96.8750 | 95.3846 | 94.3674 | 62 | 2 | 62 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.8000 | 96.0317 | 97.5806 | 92.9785 | 121 | 5 | 121 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 95.7746 | 95.7746 | 95.7746 | 94.4876 | 68 | 3 | 68 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 96.4427 | 95.3125 | 97.6000 | 93.0748 | 122 | 6 | 122 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 95.7746 | 95.7746 | 95.7746 | 94.6049 | 68 | 3 | 68 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2617 | 95.3704 | 97.1698 | 89.5257 | 103 | 5 | 103 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.9105 | 92.6829 | 97.2477 | 88.6221 | 228 | 18 | 212 | 6 | 2 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.7145 | 97.0238 | 96.4072 | 78.9673 | 163 | 5 | 161 | 6 | 2 | 33.3333 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5140 | 99.3932 | 99.6350 | 71.2386 | 819 | 5 | 819 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.1304 | 91.1111 | 87.2340 | 95.4369 | 82 | 8 | 82 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.3401 | 90.7216 | 88.0000 | 95.2584 | 88 | 9 | 88 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8120 | 99.9059 | 99.7183 | 81.2335 | 1062 | 1 | 1062 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8650 | 99.8038 | 99.9264 | 43.6688 | 4069 | 8 | 4072 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 96.4765 | 94.0254 | 99.0588 | 84.2359 | 1259 | 80 | 1263 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 96.5143 | 94.0789 | 99.0790 | 85.3464 | 1287 | 81 | 1291 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 96.5074 | 94.0502 | 99.0964 | 85.4242 | 1312 | 83 | 1316 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 97.5720 | 97.0968 | 98.0519 | 89.3683 | 301 | 9 | 302 | 6 | 2 | 33.3333 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3963 | 97.8441 | 98.9547 | 72.8220 | 590 | 13 | 568 | 6 | 2 | 33.3333 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 92.0000 | 0 | 0 | 5 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 92.2078 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | D16_PLUS | segdup | homalt | 83.6502 | 91.6667 | 76.9231 | 91.8750 | 11 | 1 | 10 | 3 | 1 | 33.3333 | |