PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26851-26900 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 93.6170 | 95.7619 | 0 | 0 | 44 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 87.5000 | 95.8261 | 0 | 0 | 21 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 93.7500 | 96.1290 | 0 | 0 | 45 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 88.0000 | 96.1240 | 0 | 0 | 22 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 93.8776 | 96.1448 | 0 | 0 | 46 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 88.0000 | 96.2236 | 0 | 0 | 22 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 72.7273 | 94.2105 | 0 | 0 | 8 | 3 | 1 | 33.3333 | |
| ckim-isaac | SNP | * | map_l250_m0_e0 | * | 66.1457 | 49.5550 | 99.4361 | 93.9169 | 1058 | 1077 | 1058 | 6 | 2 | 33.3333 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.7084 | 94.4652 | 99.0608 | 42.7483 | 3789 | 222 | 3797 | 36 | 12 | 33.3333 | |
| ckim-isaac | SNP | ti | map_l250_m0_e0 | * | 68.2974 | 51.9708 | 99.5804 | 93.7826 | 712 | 658 | 712 | 3 | 1 | 33.3333 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.1064 | 96.3243 | 99.9558 | 58.4821 | 6761 | 258 | 6786 | 3 | 1 | 33.3333 | |
| ckim-isaac | SNP | tv | map_l150_m1_e0 | * | 67.1487 | 50.6415 | 99.6215 | 77.0250 | 5526 | 5386 | 5527 | 21 | 7 | 33.3333 | |
| ckim-isaac | SNP | tv | map_l250_m0_e0 | * | 62.1185 | 45.2288 | 99.1404 | 94.1804 | 346 | 419 | 346 | 3 | 1 | 33.3333 | |
| ckim-isaac | SNP | tv | map_l250_m0_e0 | het | 63.7441 | 47.0280 | 98.8971 | 94.7702 | 269 | 303 | 269 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8893 | 100.0000 | 99.7788 | 74.2205 | 1353 | 0 | 1353 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5140 | 99.3932 | 99.6350 | 71.6258 | 819 | 5 | 819 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 98.9542 | 98.8051 | 99.1038 | 84.0367 | 1323 | 16 | 1327 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9764 | 98.8304 | 99.1228 | 85.1466 | 1352 | 16 | 1356 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 98.9962 | 98.8530 | 99.1398 | 85.2131 | 1379 | 16 | 1383 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 98.0676 | 98.0645 | 98.0707 | 89.6815 | 304 | 6 | 305 | 6 | 2 | 33.3333 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0176 | 98.6372 | 99.4008 | 77.5553 | 1520 | 21 | 1493 | 9 | 3 | 33.3333 | |
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.9859 | 98.8636 | 99.1085 | 68.8570 | 2001 | 23 | 2001 | 18 | 6 | 33.3333 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4814 | 99.4694 | 99.4934 | 82.7155 | 4124 | 22 | 4124 | 21 | 7 | 33.3333 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.2822 | 99.3573 | 99.2072 | 83.9930 | 2628 | 17 | 2628 | 21 | 7 | 33.3333 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 80.0000 | 71.2644 | 91.1765 | 99.9005 | 62 | 25 | 62 | 6 | 2 | 33.3333 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | hetalt | 83.0700 | 72.7273 | 96.8421 | 89.2290 | 96 | 36 | 92 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | * | 97.3294 | 97.0522 | 97.6082 | 98.7845 | 856 | 26 | 857 | 21 | 7 | 33.3333 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 94.7571 | 106 | 3 | 106 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | homalt | 97.3913 | 97.3913 | 97.3913 | 95.3176 | 112 | 3 | 112 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 95.4277 | 113 | 3 | 113 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 85.2611 | 93.7500 | 78.1818 | 96.1295 | 45 | 3 | 43 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.0819 | 94.1176 | 79.3103 | 96.0137 | 48 | 3 | 46 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8120 | 99.9059 | 99.7183 | 81.3713 | 1062 | 1 | 1062 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8773 | 99.8283 | 99.9264 | 44.0264 | 4070 | 7 | 4073 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7049 | 96.8468 | 98.5782 | 88.2123 | 645 | 21 | 624 | 9 | 3 | 33.3333 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7049 | 96.8468 | 98.5782 | 88.2123 | 645 | 21 | 624 | 9 | 3 | 33.3333 | |
| ckim-vqsr | INDEL | I1_5 | map_siren | * | 98.0317 | 96.9052 | 99.1848 | 83.6671 | 2912 | 93 | 2920 | 24 | 8 | 33.3333 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3114 | 97.6783 | 98.9529 | 73.0099 | 589 | 14 | 567 | 6 | 2 | 33.3333 | |
| ckim-vqsr | INDEL | I6_15 | map_siren | * | 97.5042 | 96.0656 | 98.9865 | 86.0902 | 293 | 12 | 293 | 3 | 1 | 33.3333 | |
| ckim-vqsr | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1719 | 98.7467 | 99.6008 | 69.5995 | 1497 | 19 | 1497 | 6 | 2 | 33.3333 | |
| ckim-vqsr | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.8343 | 98.2863 | 99.3884 | 71.8022 | 975 | 17 | 975 | 6 | 2 | 33.3333 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7534 | 99.6812 | 99.8257 | 39.7409 | 3439 | 11 | 3436 | 6 | 2 | 33.3333 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8363 | 99.9532 | 99.7196 | 42.4576 | 2137 | 1 | 2134 | 6 | 2 | 33.3333 | |
| dgrover-gatk | INDEL | * | func_cds | * | 99.5531 | 99.7753 | 99.3318 | 45.1100 | 444 | 1 | 446 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8893 | 100.0000 | 99.7788 | 74.1813 | 1353 | 0 | 1353 | 3 | 1 | 33.3333 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | homalt | 97.1660 | 95.3895 | 99.0099 | 94.2749 | 600 | 29 | 600 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 88.5010 | 94.0928 | 83.5366 | 90.4222 | 1338 | 84 | 1370 | 270 | 90 | 33.3333 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 92.6829 | 6 | 0 | 6 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | SNP | tv | map_l250_m1_e0 | homalt | 97.8673 | 96.4953 | 99.2788 | 90.2072 | 826 | 30 | 826 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e0 | homalt | 97.9437 | 96.5848 | 99.3414 | 90.7971 | 905 | 32 | 905 | 6 | 2 | 33.3333 | |