PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26751-26800 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | * | map_l125_m2_e0 | homalt | 73.3884 | 58.1913 | 99.3289 | 81.2185 | 444 | 319 | 444 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | het | 80.8213 | 68.5369 | 98.4709 | 89.9312 | 965 | 443 | 966 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | homalt | 73.5557 | 58.3979 | 99.3407 | 81.3295 | 452 | 322 | 452 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | het | 76.2961 | 62.7566 | 97.2851 | 94.2982 | 214 | 127 | 215 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l150_m1_e0 | homalt | 68.4583 | 52.3810 | 98.7755 | 83.8391 | 242 | 220 | 242 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l150_m2_e0 | homalt | 68.8347 | 52.8067 | 98.8327 | 85.5211 | 254 | 227 | 254 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l150_m2_e1 | homalt | 69.0476 | 53.0488 | 98.8636 | 85.5104 | 261 | 231 | 261 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7593 | 99.7812 | 99.7374 | 46.7118 | 2280 | 5 | 2279 | 6 | 2 | 33.3333 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7221 | 97.5000 | 97.9452 | 89.4888 | 156 | 4 | 143 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m0_e0 | * | 92.0000 | 95.8333 | 88.4615 | 97.8862 | 23 | 1 | 23 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9156 | 98.4914 | 99.3435 | 72.0489 | 457 | 7 | 454 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | I6_15 | map_siren | het | 97.9021 | 97.9021 | 97.9021 | 87.2093 | 140 | 3 | 140 | 3 | 1 | 33.3333 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8842 | 99.9226 | 99.8459 | 59.1543 | 3875 | 3 | 3887 | 6 | 2 | 33.3333 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8801 | 100.0000 | 99.7606 | 60.2222 | 2494 | 0 | 2500 | 6 | 2 | 33.3333 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7905 | 98.1855 | 99.4030 | 70.9117 | 974 | 18 | 999 | 6 | 2 | 33.3333 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.1734 | 98.5778 | 99.7763 | 50.5713 | 1317 | 19 | 1338 | 3 | 1 | 33.3333 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.0631 | 98.4795 | 99.6536 | 52.7550 | 842 | 13 | 863 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.5455 | 100.0000 | 89.6552 | 92.7861 | 1 | 0 | 26 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.3077 | 100.0000 | 85.7143 | 93.1596 | 1 | 0 | 18 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 96.7742 | 93.6039 | 0 | 0 | 90 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 96.7742 | 83.0601 | 0 | 0 | 90 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 85.2459 | 96.6703 | 0 | 0 | 52 | 9 | 3 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 97.0000 | 0 | 0 | 36 | 9 | 3 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 94.7368 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.4444 | 94.7674 | 98.1818 | 75.3363 | 163 | 9 | 162 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.5517 | 96.5517 | 96.5517 | 80.4494 | 84 | 3 | 84 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.7313 | 96.1538 | 95.3125 | 80.8383 | 50 | 2 | 61 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 94.9817 | 95.7447 | 94.2308 | 91.3621 | 45 | 2 | 49 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 94.3499 | 95.3125 | 93.4066 | 88.7237 | 61 | 3 | 85 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 94.8166 | 95.7746 | 93.8776 | 89.0503 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 94.8166 | 95.7746 | 93.8776 | 89.3013 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 94.4299 | 96.8750 | 92.1053 | 92.2607 | 31 | 1 | 35 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 95.8628 | 97.4359 | 94.3396 | 91.6535 | 38 | 1 | 50 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 96.3923 | 97.8261 | 95.0000 | 91.5730 | 45 | 1 | 57 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 96.4570 | 97.8723 | 95.0820 | 91.6438 | 46 | 1 | 58 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 89.4737 | 82.0175 | 98.4211 | 51.7154 | 748 | 164 | 748 | 12 | 4 | 33.3333 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | * | 22.8571 | 14.2857 | 57.1429 | 94.9640 | 4 | 24 | 4 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | het | 16.6667 | 10.5263 | 40.0000 | 95.2381 | 2 | 17 | 2 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 93.8949 | 90.4986 | 97.5560 | 73.6447 | 962 | 101 | 958 | 24 | 8 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.6735 | 92.3896 | 97.0732 | 71.9306 | 607 | 50 | 597 | 18 | 6 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m1_e0 | het | 85.8620 | 76.3441 | 98.0912 | 84.3537 | 923 | 286 | 925 | 18 | 6 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | het | 81.7401 | 69.9725 | 98.2659 | 88.4897 | 508 | 218 | 510 | 9 | 3 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e0 | het | 82.3461 | 70.8115 | 98.3696 | 88.9842 | 541 | 223 | 543 | 9 | 3 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | het | 82.2394 | 70.6494 | 98.3784 | 89.0597 | 544 | 226 | 546 | 9 | 3 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | het | 79.8048 | 67.2199 | 98.1873 | 91.0516 | 324 | 158 | 325 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e0 | het | 79.9092 | 67.3152 | 98.3003 | 91.4899 | 346 | 168 | 347 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e1 | het | 79.5911 | 66.8582 | 98.3146 | 91.5439 | 349 | 173 | 350 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | segdup | het | 98.8393 | 98.5549 | 99.1254 | 93.5804 | 682 | 10 | 680 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 65.3856 | 51.5789 | 89.2857 | 85.3018 | 49 | 46 | 50 | 6 | 2 | 33.3333 | |