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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26601-26650 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6608 | 97.0930 | 98.2353 | 79.4686 | 167 | 5 | 167 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.4127 | 98.7261 | 98.1013 | 62.9977 | 155 | 2 | 155 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.5207 | 100.0000 | 95.1613 | 75.2000 | 61 | 0 | 59 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4468 | 99.0921 | 99.8040 | 75.9768 | 1528 | 14 | 1528 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2923 | 98.9154 | 99.6721 | 75.2903 | 912 | 10 | 912 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m0_e0 | * | 97.0874 | 97.0874 | 97.0874 | 86.4652 | 100 | 3 | 100 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m0_e0 | het | 96.7213 | 98.3333 | 95.1613 | 86.8085 | 59 | 1 | 59 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2643 | 91.7476 | 96.9231 | 87.6033 | 189 | 17 | 189 | 6 | 2 | 33.3333 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2583 | 98.7709 | 99.7505 | 77.4015 | 6027 | 75 | 5998 | 15 | 5 | 33.3333 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 86.8217 | 78.3217 | 97.3913 | 92.9405 | 112 | 31 | 112 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | SNP | ti | HG002compoundhet | het | 96.8662 | 93.9821 | 99.9329 | 37.3774 | 8933 | 572 | 8934 | 6 | 2 | 33.3333 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7949 | 99.6672 | 99.9230 | 28.5321 | 3893 | 13 | 3892 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | * | map_l100_m2_e0 | * | 98.4246 | 98.0774 | 98.7742 | 83.9477 | 3622 | 71 | 3626 | 45 | 15 | 33.3333 | |
| jli-custom | INDEL | * | map_l100_m2_e1 | * | 98.4239 | 98.0564 | 98.7942 | 84.0281 | 3683 | 73 | 3687 | 45 | 15 | 33.3333 | |
| jli-custom | INDEL | * | map_l125_m1_e0 | * | 98.5968 | 98.3389 | 98.8561 | 85.7695 | 2072 | 35 | 2074 | 24 | 8 | 33.3333 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 91.2281 | 89.6552 | 92.8571 | 92.4866 | 78 | 9 | 78 | 6 | 2 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5753 | 98.5294 | 98.6213 | 85.3547 | 1072 | 16 | 1073 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e0 | * | 98.6439 | 98.6002 | 98.6877 | 86.0337 | 1127 | 16 | 1128 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | * | 98.6603 | 98.6171 | 98.7035 | 86.0971 | 1141 | 16 | 1142 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | * | 98.3275 | 98.3264 | 98.3287 | 87.8326 | 705 | 12 | 706 | 12 | 4 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 98.4283 | 98.4273 | 98.4293 | 88.4102 | 751 | 12 | 752 | 12 | 4 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_siren | * | 99.1919 | 99.0649 | 99.3191 | 79.7902 | 3496 | 33 | 3501 | 24 | 8 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8439 | 99.4186 | 98.2759 | 80.9001 | 171 | 1 | 171 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7893 | 99.0291 | 98.5507 | 71.3594 | 816 | 8 | 816 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 83.3333 | 86.2069 | 80.6452 | 94.7428 | 75 | 12 | 75 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 83.7549 | 91.3043 | 77.3585 | 95.9726 | 42 | 4 | 41 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8710 | 86.6667 | 81.2500 | 95.3033 | 78 | 12 | 78 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.3889 | 91.6667 | 78.1818 | 96.3648 | 44 | 4 | 43 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 84.4221 | 86.5979 | 82.3529 | 95.1126 | 84 | 13 | 84 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 85.2524 | 92.1569 | 79.3103 | 96.2435 | 47 | 4 | 46 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 60.0000 | 75.0000 | 50.0000 | 98.1763 | 3 | 1 | 3 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 66.6667 | 80.0000 | 57.1429 | 98.2278 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 80.0000 | 57.1429 | 98.2412 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6198 | 99.6956 | 99.5441 | 80.5441 | 655 | 2 | 655 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5663 | 99.6528 | 99.4801 | 69.4386 | 574 | 2 | 574 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6929 | 100.0000 | 99.3878 | 67.4419 | 487 | 0 | 487 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | het | 98.7797 | 98.0451 | 99.5253 | 64.0909 | 652 | 13 | 629 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.8643 | 95.7447 | 94.0000 | 79.3388 | 45 | 2 | 47 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4613 | 24 | 2 | 24 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4752 | 24 | 2 | 24 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.4292 | 98.1557 | 98.7041 | 82.3820 | 479 | 9 | 457 | 6 | 2 | 33.3333 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 90.3904 | 93.4783 | 87.5000 | 94.1889 | 43 | 3 | 42 | 6 | 2 | 33.3333 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.3306 | 97.5600 | 99.1136 | 75.7051 | 2399 | 60 | 2348 | 21 | 7 | 33.3333 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.4663 | 97.1991 | 99.7669 | 60.2778 | 1284 | 37 | 1284 | 3 | 1 | 33.3333 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5585 | 99.2191 | 99.9003 | 37.7315 | 18041 | 142 | 18038 | 18 | 6 | 33.3333 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.1684 | 89.2210 | 99.6967 | 86.2237 | 985 | 119 | 986 | 3 | 1 | 33.3333 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.9506 | 83.7500 | 99.5058 | 87.7720 | 603 | 117 | 604 | 3 | 1 | 33.3333 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4191 | 98.9769 | 99.8654 | 39.1534 | 6675 | 69 | 6675 | 9 | 3 | 33.3333 | |
| hfeng-pmm3 | SNP | ti | map_l150_m0_e0 | homalt | 99.6199 | 99.6740 | 99.5658 | 75.7331 | 2752 | 9 | 2752 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.2585 | 96.7678 | 99.7959 | 68.4820 | 1467 | 49 | 1467 | 3 | 1 | 33.3333 | |