PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26501-26550 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.6608 | 99.5482 | 99.7736 | 73.0800 | 1322 | 6 | 1322 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | homalt | 98.1818 | 97.9275 | 98.4375 | 91.2528 | 189 | 4 | 189 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.3692 | 98.9653 | 99.7765 | 72.8230 | 1339 | 14 | 1339 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | * | 97.5703 | 97.4708 | 97.6699 | 99.3659 | 501 | 13 | 503 | 12 | 4 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | * | 92.9936 | 93.5897 | 92.4051 | 99.8422 | 73 | 5 | 73 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8581 | 99.7937 | 99.9225 | 58.9725 | 3870 | 8 | 3870 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.9198 | 99.9599 | 99.8798 | 58.8255 | 2493 | 1 | 2493 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4201 | 99.1588 | 99.6829 | 84.8446 | 943 | 8 | 943 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7185 | 99.5147 | 99.9231 | 80.8305 | 3896 | 19 | 3898 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 86.0260 | 77.8947 | 96.0526 | 86.8056 | 74 | 21 | 73 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | het | 97.8290 | 96.6258 | 99.0625 | 85.1232 | 315 | 11 | 317 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | * | 98.3003 | 98.2955 | 98.3051 | 91.4286 | 173 | 3 | 174 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.2131 | 97.6285 | 98.8048 | 88.8071 | 494 | 12 | 496 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.1594 | 97.4952 | 98.8327 | 89.9117 | 506 | 13 | 508 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.2012 | 97.5518 | 98.8593 | 89.9733 | 518 | 13 | 520 | 6 | 2 | 33.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 87.4660 | 79.0698 | 97.8571 | 75.1332 | 136 | 36 | 137 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.3409 | 90.0277 | 99.0881 | 61.2028 | 325 | 36 | 326 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | * | 76.5957 | 62.7907 | 98.1818 | 93.8133 | 162 | 96 | 162 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | het | 80.0000 | 68.2540 | 96.6292 | 95.5366 | 86 | 40 | 86 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e0 | * | 76.1021 | 62.1212 | 98.2036 | 94.2215 | 164 | 100 | 164 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e0 | het | 78.7330 | 66.4122 | 96.6667 | 95.8640 | 87 | 44 | 87 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | segdup | * | 87.8562 | 79.5812 | 98.0519 | 96.2676 | 152 | 39 | 151 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | * | 71.3781 | 55.8011 | 99.0196 | 94.2286 | 303 | 240 | 303 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | het | 75.6144 | 61.3497 | 98.5222 | 94.8055 | 200 | 126 | 200 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | * | 74.9249 | 60.1205 | 99.4024 | 93.7871 | 499 | 331 | 499 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | het | 79.2593 | 66.0494 | 99.0741 | 94.2776 | 321 | 165 | 321 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e0 | * | 75.4526 | 60.7935 | 99.4275 | 94.2638 | 521 | 336 | 521 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e0 | het | 79.6631 | 66.5996 | 99.1018 | 94.7845 | 331 | 166 | 331 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | * | 75.7295 | 61.1494 | 99.4393 | 94.2939 | 532 | 338 | 532 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | het | 80.0469 | 67.1260 | 99.1279 | 94.7816 | 341 | 167 | 341 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 76.6225 | 63.6808 | 96.1659 | 75.3638 | 3384 | 1930 | 3386 | 135 | 45 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 79.3333 | 66.8539 | 97.5410 | 81.8452 | 119 | 59 | 119 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.7845 | 66.1017 | 97.4895 | 78.8121 | 234 | 120 | 233 | 6 | 2 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 75.4466 | 61.5819 | 97.3684 | 83.1111 | 109 | 68 | 111 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 77.8017 | 64.4628 | 98.1013 | 78.1466 | 156 | 86 | 155 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.5326 | 87.8942 | 99.9440 | 58.7524 | 5351 | 737 | 5353 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.9853 | 94.2753 | 99.8558 | 44.2957 | 2075 | 126 | 2077 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 14.2857 | 97.4170 | 0 | 0 | 1 | 6 | 2 | 33.3333 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 96.4602 | 0 | 0 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 99.4465 | 89.0239 | 0 | 0 | 539 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 99.4465 | 73.5867 | 0 | 0 | 539 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | SNP | ti | func_cds | * | 99.3703 | 99.0716 | 99.6707 | 28.1478 | 13659 | 128 | 13622 | 45 | 15 | 33.3333 | |
| gduggal-bwavard | SNP | ti | func_cds | het | 99.2690 | 99.0710 | 99.4677 | 32.1944 | 8425 | 79 | 8409 | 45 | 15 | 33.3333 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.5587 | 96.4058 | 98.7395 | 42.1025 | 3326 | 124 | 3290 | 42 | 14 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | hetalt | 64.0000 | 72.7273 | 57.1429 | 96.1111 | 8 | 3 | 4 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | hetalt | 76.4505 | 70.0000 | 84.2105 | 94.8925 | 28 | 12 | 16 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | hetalt | 76.1978 | 69.0476 | 85.0000 | 95.2719 | 29 | 13 | 17 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | hetalt | 75.2098 | 67.4419 | 85.0000 | 95.3271 | 29 | 14 | 17 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 86.9565 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 14.2857 | 70.8333 | 0 | 0 | 1 | 6 | 2 | 33.3333 | |