PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26451-26500 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3917 | 99.1505 | 99.6341 | 69.2077 | 817 | 7 | 817 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | * | 97.5124 | 96.2672 | 98.7903 | 81.9898 | 490 | 19 | 490 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9293 | 89.3204 | 96.8421 | 87.2226 | 184 | 22 | 184 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.7659 | 88.7218 | 97.1963 | 86.4213 | 118 | 15 | 104 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | * | 95.9267 | 95.3488 | 96.5116 | 89.3696 | 82 | 4 | 83 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | het | 96.2025 | 100.0000 | 92.6829 | 93.1667 | 37 | 0 | 38 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | het | 97.7909 | 97.7129 | 97.8690 | 82.3415 | 1239 | 29 | 1240 | 27 | 9 | 33.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m0_e0 | * | 93.4783 | 93.4783 | 93.4783 | 97.1622 | 43 | 3 | 43 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m0_e0 | het | 92.5373 | 93.9394 | 91.1765 | 96.9479 | 31 | 2 | 31 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m0_e0 | * | 93.7471 | 93.6170 | 93.8776 | 92.2713 | 44 | 3 | 46 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | hetalt | 75.3022 | 64.6465 | 90.1639 | 76.8061 | 64 | 35 | 55 | 6 | 2 | 33.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.2475 | 66.6667 | 86.3636 | 89.8148 | 18 | 9 | 19 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.7059 | 114 | 0 | 114 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3902 | 99.6942 | 99.0881 | 83.4507 | 326 | 1 | 326 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.2679 | 99.4135 | 99.1228 | 84.9406 | 339 | 2 | 339 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.2722 | 99.4169 | 99.1279 | 85.2297 | 341 | 2 | 341 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.9950 | 99.4949 | 98.5000 | 87.1548 | 197 | 1 | 197 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 88.8031 | 200 | 1 | 200 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.9840 | 203 | 1 | 203 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1698 | 97.1698 | 97.1698 | 95.7819 | 103 | 3 | 103 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | * | 97.3451 | 97.3451 | 97.3451 | 96.1837 | 110 | 3 | 110 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | * | 97.3684 | 97.3684 | 97.3684 | 96.2818 | 111 | 3 | 111 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.1100 | 88.5714 | 89.6552 | 88.5827 | 31 | 4 | 26 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4741 | 99.3855 | 99.5628 | 54.8644 | 6146 | 38 | 6148 | 27 | 9 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.3664 | 97.8824 | 92.9766 | 48.8889 | 832 | 18 | 834 | 63 | 21 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 82.2785 | 83.3333 | 81.2500 | 90.4762 | 10 | 2 | 13 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 80.9816 | 75.0000 | 88.0000 | 96.8394 | 15 | 5 | 22 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 85.9418 | 83.5616 | 88.4615 | 94.3723 | 61 | 12 | 69 | 9 | 3 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 83.3884 | 80.4348 | 86.5672 | 94.7368 | 37 | 9 | 58 | 9 | 3 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 83.6115 | 80.8511 | 86.5672 | 94.8102 | 38 | 9 | 58 | 9 | 3 | 33.3333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 83.1236 | 82.5688 | 83.6858 | 64.5989 | 360 | 76 | 1108 | 216 | 72 | 33.3333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 83.7908 | 82.8571 | 84.7458 | 75.8197 | 29 | 6 | 50 | 9 | 3 | 33.3333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.0820 | 100.0000 | 90.6250 | 75.3846 | 16 | 0 | 29 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4570 | 99.7110 | 99.2042 | 74.6128 | 345 | 1 | 374 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 80.6497 | 68.7500 | 97.5309 | 82.4295 | 143 | 65 | 237 | 6 | 2 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | hetalt | 86.3689 | 76.2878 | 99.5200 | 53.0075 | 933 | 290 | 622 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.7013 | 84.8315 | 92.9412 | 72.5806 | 151 | 27 | 158 | 12 | 4 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.6123 | 93.8272 | 91.4286 | 75.5814 | 76 | 5 | 96 | 9 | 3 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 94.4819 | 97.2222 | 91.8919 | 71.3178 | 35 | 1 | 34 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 36.3636 | 25.0000 | 66.6667 | 97.5936 | 1 | 3 | 6 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 53.3333 | 50.0000 | 57.1429 | 98.2544 | 2 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 58.5366 | 60.0000 | 57.1429 | 98.3683 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 58.5366 | 60.0000 | 57.1429 | 98.4091 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | segdup | homalt | 91.5760 | 95.7447 | 87.7551 | 90.9926 | 45 | 2 | 43 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.8446 | 80.7971 | 98.6726 | 90.8055 | 223 | 53 | 223 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7906 | 99.6556 | 99.9260 | 45.0901 | 4051 | 14 | 4051 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.1576 | 94.7581 | 99.6819 | 66.9239 | 940 | 52 | 940 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.4737 | 82.4242 | 97.8417 | 90.5954 | 136 | 29 | 136 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4032 | 98.9855 | 99.8245 | 35.5338 | 3415 | 35 | 3412 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1057 | 98.5033 | 99.7155 | 36.0522 | 2106 | 32 | 2103 | 6 | 2 | 33.3333 | |