PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2601-2650 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 79.4760 | 66.4234 | 98.9130 | 80.7799 | 273 | 138 | 273 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 94.3828 | 89.4773 | 99.8574 | 56.4904 | 9107 | 1071 | 9104 | 13 | 13 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 87.9523 | 78.9685 | 99.2424 | 47.1530 | 1179 | 314 | 1179 | 9 | 9 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 78.6704 | 65.5385 | 98.3834 | 40.9277 | 426 | 224 | 426 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.9480 | 87.0130 | 99.7519 | 36.5354 | 402 | 60 | 402 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 76.0000 | 98.2759 | 73.0233 | 57 | 18 | 57 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 53.8462 | 87.5000 | 93.7500 | 7 | 6 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 73.6842 | 59.5745 | 96.5517 | 96.3151 | 28 | 19 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 74.3590 | 60.4167 | 96.6667 | 96.4200 | 29 | 19 | 29 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 73.1707 | 58.8235 | 96.7742 | 96.3869 | 30 | 21 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | hetalt | 75.9124 | 61.9048 | 98.1132 | 96.3423 | 52 | 32 | 52 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 76.3419 | 63.7874 | 95.0495 | 71.2046 | 384 | 218 | 384 | 20 | 20 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 68.8525 | 53.8462 | 95.4545 | 75.5556 | 21 | 18 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 72.0000 | 62.7907 | 84.3750 | 80.1242 | 27 | 16 | 27 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 71.8580 | 58.1818 | 93.9394 | 76.9231 | 32 | 23 | 31 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 90.8367 | 84.7594 | 97.8528 | 60.4848 | 317 | 57 | 319 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 76.2943 | 63.6364 | 95.2381 | 76.1364 | 21 | 12 | 20 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.6924 | 86.8805 | 99.3377 | 58.4022 | 298 | 45 | 300 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.7538 | 63.8444 | 96.2069 | 68.5125 | 279 | 158 | 279 | 11 | 11 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 48.6672 | 32.4541 | 97.2509 | 55.2995 | 283 | 589 | 283 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 56.0345 | 40.3727 | 91.5493 | 70.2929 | 65 | 96 | 65 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 79.3651 | 67.5676 | 96.1538 | 69.7674 | 25 | 12 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 85.1332 | 74.3655 | 99.5470 | 43.0323 | 879 | 303 | 879 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 75.9907 | 61.6646 | 98.9879 | 43.7998 | 489 | 304 | 489 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 89.1429 | 81.2500 | 98.7342 | 66.3830 | 156 | 36 | 156 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 91.7821 | 85.1027 | 99.5992 | 26.0741 | 497 | 87 | 497 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | segdup | homalt | 93.7500 | 90.0000 | 97.8261 | 92.3967 | 45 | 5 | 45 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002complexvar | hetalt | 77.0889 | 63.2836 | 98.5981 | 68.1548 | 212 | 123 | 211 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 51.2821 | 34.8837 | 96.7742 | 79.1946 | 30 | 56 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 71.6574 | 56.6038 | 97.6190 | 68.8312 | 330 | 253 | 328 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 66.7081 | 53.2787 | 89.1892 | 86.8093 | 65 | 57 | 66 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 65.5889 | 49.3171 | 97.8852 | 70.8627 | 325 | 334 | 324 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 39.1304 | 25.0000 | 90.0000 | 87.1245 | 27 | 81 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 36.3636 | 25.0000 | 66.6667 | 85.2459 | 6 | 18 | 6 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 51.6493 | 35.3933 | 95.5224 | 83.2080 | 63 | 115 | 64 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 64.4675 | 51.4286 | 86.3636 | 81.9672 | 18 | 17 | 19 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 51.8519 | 35.5932 | 95.4545 | 76.8421 | 21 | 38 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 70.6542 | 55.4252 | 97.4227 | 64.6630 | 189 | 152 | 189 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 73.9130 | 59.4406 | 97.7011 | 62.3377 | 170 | 116 | 170 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 63.1579 | 54.5455 | 75.0000 | 88.3212 | 12 | 10 | 12 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 70.3704 | 55.0000 | 97.6636 | 65.3160 | 209 | 171 | 209 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 65.5889 | 49.3171 | 97.8852 | 70.8627 | 325 | 334 | 324 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 79.8194 | 68.1004 | 96.4103 | 67.2819 | 190 | 89 | 188 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 71.4286 | 60.9756 | 86.2069 | 85.2041 | 25 | 16 | 25 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 62.8571 | 46.8085 | 95.6522 | 83.6879 | 22 | 25 | 22 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 57.1429 | 50.0000 | 66.6667 | 90.3226 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.1450 | 34.5361 | 98.5294 | 84.0936 | 134 | 254 | 134 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 59.7610 | 42.8571 | 98.6842 | 72.9537 | 75 | 100 | 75 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 53.9683 | 37.7778 | 94.4444 | 90.3743 | 17 | 28 | 17 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | * | 46.9565 | 31.3953 | 93.1034 | 90.6149 | 27 | 59 | 27 | 2 | 2 | 100.0000 | |