PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26301-26350 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | * | 85.1994 | 91.0429 | 80.0608 | 87.9508 | 1423 | 140 | 2108 | 525 | 180 | 34.2857 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.2698 | 98.4163 | 96.1497 | 78.7844 | 3853 | 62 | 3571 | 143 | 49 | 34.2657 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.5741 | 90.2916 | 94.9750 | 58.0257 | 14834 | 1595 | 15952 | 844 | 289 | 34.2417 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | het | 93.1615 | 93.6255 | 92.7022 | 90.7097 | 1410 | 96 | 1410 | 111 | 38 | 34.2342 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m1_e0 | het | 87.4266 | 98.6622 | 78.4884 | 92.1449 | 295 | 4 | 405 | 111 | 38 | 34.2342 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.6169 | 99.5602 | 99.6736 | 72.0020 | 45501 | 201 | 45497 | 149 | 51 | 34.2282 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.6169 | 99.5602 | 99.6736 | 72.0020 | 45501 | 201 | 45497 | 149 | 51 | 34.2282 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.8040 | 97.3134 | 96.2999 | 62.2704 | 978 | 27 | 989 | 38 | 13 | 34.2105 | |
| ltrigg-rtg2 | INDEL | D6_15 | * | het | 99.2141 | 99.0942 | 99.3342 | 52.7094 | 11487 | 105 | 11339 | 76 | 26 | 34.2105 | |
| gduggal-bwavard | INDEL | D1_5 | map_siren | het | 93.7475 | 98.8142 | 89.1751 | 86.6713 | 2250 | 27 | 2216 | 269 | 92 | 34.2007 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.1627 | 97.3832 | 96.9432 | 73.2443 | 6252 | 168 | 6216 | 196 | 67 | 34.1837 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.1627 | 97.3832 | 96.9432 | 73.2443 | 6252 | 168 | 6216 | 196 | 67 | 34.1837 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | * | 94.8696 | 95.2811 | 94.4616 | 90.2325 | 2746 | 136 | 2746 | 161 | 55 | 34.1615 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | het | 98.6006 | 98.9899 | 98.2143 | 79.8047 | 2254 | 23 | 2255 | 41 | 14 | 34.1463 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8496 | 98.7433 | 98.9562 | 63.8705 | 3850 | 49 | 3887 | 41 | 14 | 34.1463 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 67.3274 | 61.9565 | 73.7179 | 97.3052 | 114 | 70 | 115 | 41 | 14 | 34.1463 | |
| cchapple-custom | INDEL | I1_5 | map_siren | * | 98.3102 | 98.0033 | 98.6191 | 79.8398 | 2945 | 60 | 2928 | 41 | 14 | 34.1463 | |
| anovak-vg | INDEL | * | map_l250_m1_e0 | het | 64.7498 | 67.8947 | 61.8834 | 96.6176 | 129 | 61 | 138 | 85 | 29 | 34.1176 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.6904 | 70.9091 | 61.1872 | 88.2131 | 117 | 48 | 134 | 85 | 29 | 34.1176 | |
| qzeng-custom | INDEL | D6_15 | HG002complexvar | het | 94.9295 | 96.7628 | 93.1643 | 54.7892 | 3019 | 101 | 4116 | 302 | 103 | 34.1060 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.7982 | 92.4763 | 97.2396 | 66.7223 | 1561 | 127 | 1550 | 44 | 15 | 34.0909 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.3154 | 98.5106 | 96.1490 | 77.8952 | 2381 | 36 | 2272 | 91 | 31 | 34.0659 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 89.1155 | 94.7826 | 84.0878 | 89.9821 | 1199 | 66 | 1226 | 232 | 79 | 34.0517 | |
| ltrigg-rtg1 | SNP | * | map_l125_m0_e0 | * | 98.5751 | 97.4258 | 99.7517 | 64.2305 | 18886 | 499 | 18884 | 47 | 16 | 34.0426 | |
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | * | 63.7993 | 47.0146 | 99.2230 | 91.1459 | 6000 | 6762 | 6002 | 47 | 16 | 34.0426 | |
| astatham-gatk | SNP | tv | map_l100_m1_e0 | * | 91.7374 | 84.8986 | 99.7745 | 70.4613 | 20801 | 3700 | 20797 | 47 | 16 | 34.0426 | |
| astatham-gatk | SNP | tv | map_l100_m2_e0 | * | 91.8266 | 85.0477 | 99.7797 | 71.9649 | 21290 | 3743 | 21286 | 47 | 16 | 34.0426 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.2729 | 74.8150 | 96.4680 | 58.6163 | 7786 | 2621 | 7784 | 285 | 97 | 34.0351 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | het | 94.4093 | 96.1856 | 92.6975 | 87.4548 | 1866 | 74 | 1866 | 147 | 50 | 34.0136 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 56.9333 | 42.2920 | 87.0801 | 78.6542 | 310 | 423 | 337 | 50 | 17 | 34.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | het | 94.1757 | 98.1481 | 90.5123 | 91.5531 | 477 | 9 | 477 | 50 | 17 | 34.0000 | |
| qzeng-custom | INDEL | * | map_l125_m1_e0 | het | 82.2615 | 74.0824 | 92.4708 | 92.9115 | 989 | 346 | 1265 | 103 | 35 | 33.9806 | |
| anovak-vg | INDEL | * | map_l150_m0_e0 | het | 69.8552 | 68.9150 | 70.8215 | 94.2917 | 235 | 106 | 250 | 103 | 35 | 33.9806 | |
| asubramanian-gatk | SNP | tv | HG002complexvar | * | 98.0754 | 96.2442 | 99.9776 | 22.6117 | 236907 | 9245 | 236824 | 53 | 18 | 33.9623 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | het | 94.0270 | 98.1891 | 90.2033 | 92.2978 | 488 | 9 | 488 | 53 | 18 | 33.9623 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 70.7998 | 95.6522 | 56.1983 | 91.6031 | 66 | 3 | 68 | 53 | 18 | 33.9623 | |
| raldana-dualsentieon | SNP | tv | HG002complexvar | * | 99.8458 | 99.7136 | 99.9784 | 21.7224 | 245447 | 705 | 245362 | 53 | 18 | 33.9623 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | * | 57.3803 | 61.8557 | 53.5088 | 92.9889 | 60 | 37 | 61 | 53 | 18 | 33.9623 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 92.4984 | 86.7234 | 99.0973 | 67.6373 | 24247 | 3712 | 24262 | 221 | 75 | 33.9367 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | * | 67.3567 | 71.3287 | 63.8037 | 92.7716 | 102 | 41 | 104 | 59 | 20 | 33.8983 | |
| gduggal-snapfb | INDEL | I1_5 | HG002complexvar | * | 93.5109 | 94.6378 | 92.4106 | 55.4813 | 31574 | 1789 | 31902 | 2620 | 888 | 33.8931 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 50.2628 | 41.8345 | 62.9440 | 73.1508 | 18129 | 25206 | 21603 | 12718 | 4309 | 33.8811 | |
| ciseli-custom | INDEL | D6_15 | * | het | 77.1133 | 84.3154 | 71.0447 | 55.4839 | 9773 | 1818 | 10153 | 4138 | 1402 | 33.8811 | |
| gduggal-snapplat | INDEL | * | * | homalt | 81.6385 | 73.6219 | 91.6144 | 63.4553 | 92154 | 33018 | 99397 | 9098 | 3079 | 33.8426 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8957 | 98.4694 | 99.3257 | 54.3646 | 19558 | 304 | 19592 | 133 | 45 | 33.8346 | |
| ciseli-custom | SNP | tv | HG002complexvar | homalt | 95.4763 | 98.8182 | 92.3530 | 24.8215 | 93987 | 1124 | 92583 | 7666 | 2593 | 33.8247 | |
| astatham-gatk | SNP | * | map_l100_m0_e0 | het | 88.7308 | 80.0000 | 99.6007 | 77.5238 | 16964 | 4241 | 16960 | 68 | 23 | 33.8235 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 28.4211 | 61.3821 | 0 | 133 | 27 | 68 | 23 | 33.8235 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | * | 82.8587 | 74.2259 | 93.7640 | 91.6841 | 1630 | 566 | 2090 | 139 | 47 | 33.8129 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e0 | * | 97.7706 | 97.1809 | 98.3675 | 76.0737 | 29405 | 853 | 29405 | 488 | 165 | 33.8115 | |