PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26201-26250 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | * | HG002complexvar | homalt | 81.8252 | 74.5588 | 90.6609 | 60.0040 | 20151 | 6876 | 21619 | 2227 | 779 | 34.9798 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.9654 | 89.6725 | 78.9413 | 89.5816 | 712 | 82 | 686 | 183 | 64 | 34.9727 | |
| gduggal-snapfb | INDEL | * | segdup | * | 93.0343 | 91.0407 | 95.1171 | 94.2770 | 2327 | 229 | 2396 | 123 | 43 | 34.9593 | |
| jpowers-varprowl | SNP | ti | map_l125_m1_e0 | * | 97.7356 | 97.1093 | 98.3701 | 74.4440 | 28487 | 848 | 28487 | 472 | 165 | 34.9576 | |
| ltrigg-rtg2 | INDEL | D1_5 | * | * | 99.4769 | 99.2395 | 99.7155 | 55.7210 | 145629 | 1116 | 145463 | 415 | 145 | 34.9398 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | het | 94.1968 | 98.3607 | 90.3712 | 90.4265 | 780 | 13 | 779 | 83 | 29 | 34.9398 | |
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | het | 82.2817 | 86.8020 | 78.2090 | 87.2186 | 513 | 78 | 524 | 146 | 51 | 34.9315 | |
| gduggal-bwavard | INDEL | D1_5 | map_siren | * | 93.7516 | 95.1544 | 92.3895 | 83.9860 | 3358 | 171 | 3302 | 272 | 95 | 34.9265 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | * | 96.0874 | 94.0096 | 98.2592 | 84.3618 | 3531 | 225 | 3556 | 63 | 22 | 34.9206 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 89.8753 | 95.0578 | 85.2286 | 76.3056 | 904 | 47 | 727 | 126 | 44 | 34.9206 | |
| ltrigg-rtg1 | SNP | * | map_l150_m1_e0 | * | 98.9007 | 98.0267 | 99.7905 | 66.4727 | 30005 | 604 | 30007 | 63 | 22 | 34.9206 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 80.7791 | 74.7144 | 87.9154 | 43.6787 | 10921 | 3696 | 21956 | 3018 | 1053 | 34.8907 | |
| egarrison-hhga | SNP | tv | map_siren | het | 99.4896 | 99.1331 | 99.8486 | 55.6665 | 28361 | 248 | 28361 | 43 | 15 | 34.8837 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | * | 97.7935 | 97.5281 | 98.0604 | 98.3524 | 2170 | 55 | 2174 | 43 | 15 | 34.8837 | |
| jli-custom | SNP | * | HG002complexvar | het | 99.9263 | 99.8859 | 99.9667 | 18.4399 | 464966 | 531 | 464872 | 155 | 54 | 34.8387 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.5123 | 99.4950 | 99.5296 | 71.9110 | 28567 | 145 | 28561 | 135 | 47 | 34.8148 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.5123 | 99.4950 | 99.5296 | 71.9110 | 28567 | 145 | 28561 | 135 | 47 | 34.8148 | |
| qzeng-custom | INDEL | I6_15 | * | het | 91.4351 | 95.6444 | 87.5806 | 52.1449 | 9596 | 437 | 11812 | 1675 | 583 | 34.8060 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | het | 97.6418 | 96.9460 | 98.3477 | 87.0294 | 1365 | 43 | 1369 | 23 | 8 | 34.7826 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.0770 | 67.4930 | 98.4290 | 83.1937 | 1443 | 695 | 1441 | 23 | 8 | 34.7826 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002complexvar | het | 84.5433 | 74.6497 | 97.4600 | 66.9103 | 1758 | 597 | 1765 | 46 | 16 | 34.7826 | |
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | homalt | 96.2940 | 93.4893 | 99.2723 | 82.1168 | 6275 | 437 | 6275 | 46 | 16 | 34.7826 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m1_e0 | * | 89.6858 | 94.8617 | 85.0455 | 90.4043 | 480 | 26 | 654 | 115 | 40 | 34.7826 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 28.1250 | 61.4458 | 0 | 497 | 27 | 69 | 24 | 34.7826 | |
| jli-custom | INDEL | D1_5 | map_l100_m1_e0 | * | 98.6735 | 98.5931 | 98.7541 | 82.3788 | 1822 | 26 | 1823 | 23 | 8 | 34.7826 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 98.6673 | 98.5379 | 98.7971 | 83.0195 | 1887 | 28 | 1889 | 23 | 8 | 34.7826 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | * | 98.6576 | 98.5044 | 98.8114 | 83.1328 | 1910 | 29 | 1912 | 23 | 8 | 34.7826 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2829 | 99.3333 | 99.2326 | 76.5804 | 2980 | 20 | 2974 | 23 | 8 | 34.7826 | |
| hfeng-pmm2 | SNP | * | map_l150_m0_e0 | homalt | 99.5726 | 99.7065 | 99.4390 | 76.7349 | 4077 | 12 | 4077 | 23 | 8 | 34.7826 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | het | 97.5202 | 96.2887 | 98.7837 | 86.3722 | 1868 | 72 | 1868 | 23 | 8 | 34.7826 | |
| jli-custom | SNP | tv | map_l250_m2_e1 | het | 97.5522 | 96.3359 | 98.7996 | 86.4727 | 1893 | 72 | 1893 | 23 | 8 | 34.7826 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7040 | 99.5496 | 99.8589 | 54.8699 | 16355 | 74 | 16278 | 23 | 8 | 34.7826 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.5827 | 98.8772 | 98.2900 | 65.3261 | 1321 | 15 | 1322 | 23 | 8 | 34.7826 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8607 | 96.3706 | 99.3977 | 55.2797 | 15188 | 572 | 15184 | 92 | 32 | 34.7826 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 24.9332 | 16.1290 | 54.9020 | 84.7305 | 10 | 52 | 28 | 23 | 8 | 34.7826 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.7024 | 99.7469 | 99.6579 | 53.4220 | 6699 | 17 | 6701 | 23 | 8 | 34.7826 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 59.3370 | 47.9747 | 77.7515 | 66.6856 | 5697 | 6178 | 8230 | 2355 | 819 | 34.7771 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0697 | 98.8184 | 99.3222 | 69.4679 | 30775 | 368 | 30774 | 210 | 73 | 34.7619 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0697 | 98.8184 | 99.3222 | 69.4679 | 30775 | 368 | 30774 | 210 | 73 | 34.7619 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1613 | 99.3118 | 99.0113 | 50.7900 | 20060 | 139 | 19027 | 190 | 66 | 34.7368 | |
| jli-custom | SNP | ti | map_l125_m0_e0 | het | 98.6256 | 98.1363 | 99.1199 | 71.4709 | 8109 | 154 | 8109 | 72 | 25 | 34.7222 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.0837 | 98.5942 | 97.5785 | 75.0150 | 4769 | 68 | 4876 | 121 | 42 | 34.7107 | |
| ghariani-varprowl | SNP | tv | HG002compoundhet | * | 76.9891 | 85.1395 | 70.2629 | 63.5595 | 7597 | 1326 | 7724 | 3269 | 1134 | 34.6895 | |
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | het | 84.4943 | 95.5556 | 75.7282 | 32.4836 | 387 | 18 | 2106 | 675 | 234 | 34.6667 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 90.7728 | 88.5693 | 93.0888 | 46.5749 | 1170 | 151 | 3071 | 228 | 79 | 34.6491 | |
| ndellapenna-hhga | SNP | tv | segdup | * | 99.4730 | 99.5546 | 99.3915 | 90.2986 | 8494 | 38 | 8494 | 52 | 18 | 34.6154 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | het | 97.7235 | 97.6013 | 97.8459 | 81.5387 | 1180 | 29 | 1181 | 26 | 9 | 34.6154 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | het | 97.8087 | 97.6911 | 97.9266 | 82.2279 | 1227 | 29 | 1228 | 26 | 9 | 34.6154 | |
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.2427 | 99.0344 | 99.4519 | 67.0189 | 4718 | 46 | 4718 | 26 | 9 | 34.6154 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6951 | 99.7767 | 99.6136 | 53.1211 | 6701 | 15 | 6703 | 26 | 9 | 34.6154 | |