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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 509 510 511 512 513 514 515 516 517 ... 1720 1721 » 25601-25650 / 86044 show all
ckim-isaac	INDEL	*	map_l150_m2_e1	*	74.8271	60.3197	98.5227	91.3700	868	571	867	13	5	38.4615
ckim-isaac	INDEL	*	map_siren	het	87.7323	79.7249	97.5278	80.3155	3594	914	3590	91	35	38.4615
cchapple-custom	INDEL	C6_15	*	het	95.1311	100.0000	90.7143	93.8570	7	0	254	26	10	38.4615
gduggal-snapplat	SNP	tv	map_siren	homalt	96.8214	93.9095	99.9197	58.2133	16190	1050	16181	13	5	38.4615
gduggal-snapfb	SNP	tv	map_l250_m2_e1	homalt	95.8740	93.3404	98.5491	93.5115	883	63	883	13	5	38.4615
egarrison-hhga	SNP	tv	map_l100_m0_e0	het	99.0740	98.5184	99.6359	68.9508	7115	107	7115	26	10	38.4615
egarrison-hhga	SNP	tv	map_l250_m2_e0	het	98.0955	96.9072	99.3133	87.4569	1880	60	1880	13	5	38.4615
egarrison-hhga	SNP	tv	map_l250_m2_e1	het	98.1200	96.9466	99.3222	87.5276	1905	60	1905	13	5	38.4615
ckim-isaac	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.2766	92.2164	96.4310	62.9827	1398	118	1405	52	20	38.4615
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.6974	95.4955	97.9299	88.5024	636	30	615	13	5	38.4615
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.6974	95.4955	97.9299	88.5024	636	30	615	13	5	38.4615
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3603	99.2881	99.4326	81.7523	6834	49	6834	39	15	38.4615
ckim-isaac	INDEL	I1_5	map_l100_m2_e1	*	85.4353	75.2688	98.7770	84.4363	1050	345	1050	13	5	38.4615
qzeng-custom	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	59.6849	56.0000	63.8889	83.7838	14	11	23	13	5	38.4615
qzeng-custom	INDEL	I1_5	map_l100_m0_e0	*	78.8389	67.0350	95.6882	90.8414	364	179	577	26	10	38.4615
ndellapenna-hhga	INDEL	*	map_l150_m2_e1	*	97.6974	97.2203	98.1793	98.7700	1399	40	1402	26	10	38.4615
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8741	99.9407	99.8075	37.7626	6741	4	6741	13	5	38.4615
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	91.2758	92.1260	90.4412	74.2424	117	10	123	13	5	38.4615
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	83.7170	82.1053	85.3933	87.5698	78	17	76	13	5	38.4615
ndellapenna-hhga	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3259	98.9526	99.7019	63.0961	17384	184	17391	52	20	38.4615
qzeng-custom	INDEL	*	map_l125_m0_e0	het	81.0999	72.7428	91.6264	95.2483	427	160	569	52	20	38.4615
hfeng-pmm2	SNP	ti	map_l150_m0_e0	homalt	99.6019	99.6740	99.5298	75.8368	2752	9	2752	13	5	38.4615
hfeng-pmm1	SNP	tv	map_l100_m1_e0	homalt	99.8507	99.8452	99.8562	62.4720	9029	14	9029	13	5	38.4615
hfeng-pmm1	SNP	tv	map_l100_m2_e0	homalt	99.8535	99.8481	99.8589	64.8359	9200	14	9200	13	5	38.4615
hfeng-pmm1	SNP	tv	map_l100_m2_e1	homalt	99.8549	99.8495	99.8602	64.8422	9288	14	9288	13	5	38.4615
hfeng-pmm1	SNP	tv	map_l125_m1_e0	homalt	99.7867	99.7952	99.7782	67.3918	5848	12	5848	13	5	38.4615
hfeng-pmm1	SNP	tv	map_l125_m2_e0	homalt	99.7923	99.8006	99.7840	69.7785	6005	12	6005	13	5	38.4615
hfeng-pmm1	SNP	tv	map_l125_m2_e1	homalt	99.7942	99.8024	99.7860	69.8227	6062	12	6062	13	5	38.4615
hfeng-pmm3	SNP	tv	HG002complexvar	*	99.8576	99.7315	99.9841	21.7544	245491	661	245404	39	15	38.4615
hfeng-pmm3	SNP	tv	map_l100_m1_e0	homalt	99.8285	99.8010	99.8562	62.3809	9025	18	9025	13	5	38.4615
hfeng-pmm3	SNP	tv	map_l100_m2_e0	homalt	99.8317	99.8046	99.8588	64.7570	9196	18	9196	13	5	38.4615
hfeng-pmm3	SNP	tv	map_l100_m2_e1	homalt	99.8333	99.8065	99.8602	64.7574	9284	18	9284	13	5	38.4615
hfeng-pmm3	SNP	tv	map_l125_m1_e0	homalt	99.7525	99.7270	99.7780	67.2958	5844	16	5844	13	5	38.4615
hfeng-pmm3	SNP	tv	map_l125_m2_e0	homalt	99.7590	99.7341	99.7838	69.7058	6001	16	6001	13	5	38.4615
hfeng-pmm3	SNP	tv	map_l125_m2_e1	homalt	99.7612	99.7366	99.7859	69.7479	6058	16	6058	13	5	38.4615
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5795	99.7661	99.3937	76.6906	2133	5	2131	13	5	38.4615
jli-custom	INDEL	D1_5	map_l150_m2_e1	*	98.3301	98.3290	98.3312	88.4043	765	13	766	13	5	38.4615
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	59.6364	59.0060	60.2804	68.5856	4357	3027	6148	4051	1556	38.4103
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.6938	0.3506	33.1551	66.3366	4	1137	124	250	96	38.4000
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.5858	97.9822	99.1968	53.1729	15442	318	15438	125	48	38.4000
ciseli-custom	INDEL	C1_5	HG002compoundhet	homalt	0.0000	0.0000	5.3812	85.0736	0	0	12	211	81	38.3886
astatham-gatk	SNP	*	map_l100_m1_e0	het	86.7442	76.7367	99.7535	74.2815	34807	10552	34796	86	33	38.3721
astatham-gatk	SNP	*	map_l100_m2_e0	het	86.8923	76.9650	99.7597	75.4072	35711	10688	35700	86	33	38.3721
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	40.1458	27.7350	72.6592	88.8238	180	469	194	73	28	38.3562
gduggal-snapfb	SNP	tv	map_l100_m0_e0	het	95.8604	97.4661	94.3068	70.6611	7039	183	7040	425	163	38.3529
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	95.7416	95.5607	95.9231	39.1360	4542	211	4541	193	74	38.3420
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	76.8190	64.3595	95.2607	61.2844	623	345	1206	60	23	38.3333
ciseli-custom	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	69.7634	77.7946	63.2353	72.2165	515	147	516	300	115	38.3333
astatham-gatk	SNP	*	map_siren	het	89.6918	81.4059	99.8557	63.3177	74072	16919	74058	107	41	38.3178
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.4322	97.6427	99.2345	66.5194	6089	147	6093	47	18	38.2979

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