PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25551-25600 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | ti | HG002compoundhet | homalt | 97.1981 | 99.5131 | 94.9883 | 44.4780 | 7358 | 36 | 2445 | 129 | 50 | 38.7597 | |
| anovak-vg | SNP | * | segdup | * | 97.8173 | 97.8231 | 97.8116 | 92.2860 | 27456 | 611 | 27219 | 609 | 236 | 38.7521 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e0 | * | 97.7110 | 97.8206 | 97.6017 | 69.6113 | 72352 | 1612 | 72358 | 1778 | 689 | 38.7514 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7746 | 96.6611 | 98.9141 | 61.8918 | 63169 | 2182 | 63489 | 697 | 270 | 38.7374 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.7746 | 96.6611 | 98.9141 | 61.8918 | 63169 | 2182 | 63489 | 697 | 270 | 38.7374 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 72.7559 | 58.4625 | 96.3002 | 76.5890 | 3696 | 2626 | 3696 | 142 | 55 | 38.7324 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 72.7559 | 58.4625 | 96.3002 | 76.5890 | 3696 | 2626 | 3696 | 142 | 55 | 38.7324 | |
| ltrigg-rtg1 | INDEL | D1_5 | * | * | 99.2818 | 98.7945 | 99.7740 | 55.6693 | 144976 | 1769 | 144802 | 328 | 127 | 38.7195 | |
| jli-custom | SNP | * | HG002compoundhet | het | 99.6122 | 99.6614 | 99.5631 | 45.6634 | 14130 | 48 | 14128 | 62 | 24 | 38.7097 | |
| ltrigg-rtg1 | SNP | ti | HG002compoundhet | * | 98.6394 | 97.4883 | 99.8180 | 33.8383 | 17039 | 439 | 17003 | 31 | 12 | 38.7097 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.9225 | 80.8559 | 91.6667 | 87.7792 | 359 | 85 | 341 | 31 | 12 | 38.7097 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | * | 96.3446 | 96.7049 | 95.9869 | 79.3609 | 11123 | 379 | 11122 | 465 | 180 | 38.7097 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 36.7347 | 63.4328 | 0 | 414 | 18 | 31 | 12 | 38.7097 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3263 | 98.9377 | 99.7181 | 59.8869 | 10990 | 118 | 10964 | 31 | 12 | 38.7097 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | het | 99.1023 | 98.4194 | 99.7947 | 64.2605 | 30138 | 484 | 30140 | 62 | 24 | 38.7097 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | * | 99.2907 | 98.8332 | 99.7525 | 64.4232 | 24988 | 295 | 24988 | 62 | 24 | 38.7097 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.9854 | 96.3753 | 91.7112 | 76.9278 | 452 | 17 | 343 | 31 | 12 | 38.7097 | |
| egarrison-hhga | SNP | tv | map_l125_m2_e0 | het | 99.1915 | 98.6880 | 99.7001 | 70.3958 | 10305 | 137 | 10305 | 31 | 12 | 38.7097 | |
| egarrison-hhga | SNP | tv | map_l125_m2_e1 | het | 99.1904 | 98.6828 | 99.7032 | 70.4601 | 10414 | 139 | 10414 | 31 | 12 | 38.7097 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.9478 | 97.9351 | 97.9605 | 73.1911 | 5976 | 126 | 5956 | 124 | 48 | 38.7097 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | het | 87.6002 | 97.6341 | 79.4365 | 87.6420 | 1238 | 30 | 1607 | 416 | 161 | 38.7019 | |
| ndellapenna-hhga | SNP | * | map_l100_m1_e0 | het | 99.0732 | 98.3928 | 99.7631 | 62.7556 | 44630 | 729 | 44632 | 106 | 41 | 38.6792 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.4534 | 92.3513 | 94.5822 | 43.0987 | 9611 | 796 | 14228 | 815 | 315 | 38.6503 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7395 | 99.7766 | 99.7024 | 56.2348 | 14737 | 33 | 14739 | 44 | 17 | 38.6364 | |
| qzeng-custom | INDEL | I16_PLUS | HG002complexvar | * | 86.4583 | 83.8044 | 89.2857 | 60.9632 | 1097 | 212 | 1100 | 132 | 51 | 38.6364 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e1 | * | 97.7287 | 97.8404 | 97.6173 | 69.6430 | 73123 | 1614 | 73129 | 1785 | 689 | 38.5994 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | het | 99.0911 | 98.4883 | 99.7013 | 74.4872 | 19024 | 292 | 19024 | 57 | 22 | 38.5965 | |
| gduggal-bwafb | INDEL | D1_5 | HG002complexvar | het | 98.1510 | 96.8794 | 99.4564 | 54.4051 | 20117 | 648 | 20856 | 114 | 44 | 38.5965 | |
| ltrigg-rtg2 | INDEL | I1_5 | * | * | 99.5218 | 99.3203 | 99.7241 | 55.5467 | 149639 | 1024 | 148928 | 412 | 159 | 38.5922 | |
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2155 | 98.8292 | 99.6047 | 53.9964 | 17642 | 209 | 17640 | 70 | 27 | 38.5714 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 89.0850 | 93.1385 | 85.3697 | 68.5884 | 2932 | 216 | 3256 | 558 | 215 | 38.5305 | |
| asubramanian-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.6320 | 97.9249 | 99.3493 | 69.0808 | 1982 | 42 | 1985 | 13 | 5 | 38.4615 | |
| asubramanian-gatk | SNP | ti | map_l100_m1_e0 | * | 61.7256 | 44.6642 | 99.8787 | 83.4799 | 21408 | 26523 | 21404 | 26 | 10 | 38.4615 | |
| asubramanian-gatk | SNP | ti | map_l100_m1_e0 | het | 64.3552 | 47.4851 | 99.8174 | 85.5215 | 14218 | 15724 | 14214 | 26 | 10 | 38.4615 | |
| asubramanian-gatk | SNP | ti | map_l150_m2_e0 | * | 40.8545 | 25.6874 | 99.7538 | 94.2642 | 5269 | 15243 | 5267 | 13 | 5 | 38.4615 | |
| asubramanian-gatk | SNP | ti | map_l150_m2_e0 | het | 44.0116 | 28.2431 | 99.6437 | 94.9202 | 3638 | 9243 | 3636 | 13 | 5 | 38.4615 | |
| asubramanian-gatk | SNP | ti | map_l150_m2_e1 | * | 40.9816 | 25.7878 | 99.7572 | 94.2645 | 5344 | 15379 | 5342 | 13 | 5 | 38.4615 | |
| asubramanian-gatk | SNP | ti | map_l150_m2_e1 | het | 44.1440 | 28.3519 | 99.6487 | 94.9230 | 3690 | 9325 | 3688 | 13 | 5 | 38.4615 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.0867 | 68.5777 | 99.1772 | 58.7467 | 1567 | 718 | 1567 | 13 | 5 | 38.4615 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | * | 92.5116 | 88.2122 | 97.2516 | 82.2846 | 449 | 60 | 460 | 13 | 5 | 38.4615 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.9845 | 94.5971 | 99.4954 | 76.1070 | 5130 | 293 | 5127 | 26 | 10 | 38.4615 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.9845 | 94.5971 | 99.4954 | 76.1070 | 5130 | 293 | 5127 | 26 | 10 | 38.4615 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | * | het | 92.1773 | 85.9088 | 99.4326 | 48.0027 | 2335 | 383 | 2278 | 13 | 5 | 38.4615 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.6093 | 96.3303 | 96.8900 | 85.7581 | 420 | 16 | 405 | 13 | 5 | 38.4615 | |
| jli-custom | SNP | ti | map_l150_m0_e0 | het | 98.3675 | 97.5280 | 99.2216 | 76.7991 | 4971 | 126 | 4971 | 39 | 15 | 38.4615 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | het | 94.3489 | 95.0495 | 93.6585 | 92.6126 | 192 | 10 | 192 | 13 | 5 | 38.4615 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8565 | 99.9202 | 99.7929 | 46.2638 | 6263 | 5 | 6265 | 13 | 5 | 38.4615 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 63.5631 | 57.2581 | 71.4286 | 99.8537 | 71 | 53 | 65 | 26 | 10 | 38.4615 | |
| ckim-isaac | INDEL | * | map_l150_m1_e0 | * | 74.6172 | 60.0897 | 98.4088 | 90.7075 | 804 | 534 | 804 | 13 | 5 | 38.4615 | |
| ckim-isaac | INDEL | * | map_l150_m2_e0 | * | 74.8018 | 60.2983 | 98.4919 | 91.3653 | 849 | 559 | 849 | 13 | 5 | 38.4615 | |