PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25301-25350 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | * | 95.5752 | 95.5752 | 95.5752 | 96.0900 | 108 | 5 | 108 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | * | 95.6140 | 95.6140 | 95.6140 | 96.1745 | 109 | 5 | 109 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | * | 94.1176 | 96.5517 | 91.8033 | 97.0113 | 56 | 2 | 56 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | het | 93.3333 | 100.0000 | 87.5000 | 97.4260 | 37 | 0 | 35 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | * | 95.0392 | 95.2880 | 94.7917 | 95.0541 | 182 | 9 | 182 | 10 | 4 | 40.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.3674 | 89.4737 | 95.4545 | 87.9781 | 119 | 14 | 105 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7817 | 98.0847 | 99.4888 | 71.9690 | 973 | 19 | 973 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8072 | 99.6609 | 99.9540 | 61.5860 | 10874 | 37 | 10870 | 5 | 2 | 40.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m0_e0 | homalt | 95.6349 | 93.4109 | 97.9675 | 78.7565 | 241 | 17 | 241 | 5 | 2 | 40.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m1_e0 | homalt | 95.8115 | 92.7365 | 99.0975 | 76.8491 | 549 | 43 | 549 | 5 | 2 | 40.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m0_e0 | * | 94.8537 | 94.7581 | 94.9495 | 88.5760 | 470 | 26 | 470 | 25 | 10 | 40.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 94.4444 | 94.1176 | 94.7735 | 91.6932 | 272 | 17 | 272 | 15 | 6 | 40.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | * | 96.8582 | 94.5607 | 99.2701 | 82.3545 | 678 | 39 | 680 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | * | 97.0527 | 94.8886 | 99.3179 | 83.4836 | 724 | 39 | 728 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.0436 | 94.8586 | 99.3316 | 83.4403 | 738 | 40 | 743 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | * | 98.9478 | 98.1084 | 99.8017 | 69.1640 | 20124 | 388 | 20128 | 40 | 16 | 40.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | homalt | 99.7918 | 99.7140 | 99.8697 | 63.2094 | 3835 | 11 | 3833 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | het | 96.2660 | 93.0610 | 99.6997 | 76.8718 | 1663 | 124 | 1660 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.5484 | 95.0820 | 92.0635 | 90.0943 | 58 | 3 | 58 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 98.5507 | 98.7097 | 98.3923 | 87.2069 | 306 | 4 | 306 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 99.2158 | 99.0361 | 99.3961 | 84.2466 | 822 | 8 | 823 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 99.1816 | 98.9498 | 99.4145 | 85.5524 | 848 | 9 | 849 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 99.1939 | 98.9655 | 99.4233 | 85.7143 | 861 | 9 | 862 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 98.9129 | 98.8142 | 99.0119 | 87.8511 | 500 | 6 | 501 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 98.8426 | 98.6513 | 99.0347 | 89.1016 | 512 | 7 | 513 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 98.8688 | 98.6817 | 99.0566 | 89.1616 | 524 | 7 | 525 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | segdup | * | 99.3377 | 99.1501 | 99.5261 | 94.0200 | 1050 | 9 | 1050 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.1490 | 92.7126 | 97.7169 | 78.3168 | 229 | 18 | 214 | 5 | 2 | 40.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1341 | 99.1132 | 99.1550 | 87.2227 | 2347 | 21 | 2347 | 20 | 8 | 40.0000 | |
| jli-custom | SNP | ti | HG002compoundhet | het | 99.6793 | 99.7265 | 99.6321 | 39.4553 | 9479 | 26 | 9479 | 35 | 14 | 40.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5057 | 97.2851 | 97.7273 | 90.8676 | 215 | 6 | 215 | 5 | 2 | 40.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.3856 | 98.0263 | 96.7532 | 91.1341 | 149 | 3 | 149 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002complexvar | * | 99.3197 | 100.0000 | 98.6486 | 84.1134 | 4 | 0 | 365 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.9417 | 80.9524 | 98.6807 | 38.3740 | 374 | 88 | 374 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.2857 | 75.1592 | 95.9350 | 54.2751 | 118 | 39 | 118 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 78.7229 | 70.4918 | 89.1304 | 63.2000 | 43 | 18 | 41 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | * | 81.3853 | 69.2449 | 98.6877 | 86.2752 | 376 | 167 | 376 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | homalt | 79.1574 | 66.1111 | 98.6188 | 77.9671 | 357 | 183 | 357 | 5 | 2 | 40.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5246 | 99.3671 | 99.6825 | 48.0883 | 1570 | 10 | 1570 | 5 | 2 | 40.0000 | |
| egarrison-hhga | SNP | ti | map_l125_m1_e0 | het | 99.2515 | 98.7299 | 99.7787 | 70.5410 | 18034 | 232 | 18034 | 40 | 16 | 40.0000 | |
| egarrison-hhga | SNP | tv | map_l150_m0_e0 | * | 98.9629 | 98.2990 | 99.6357 | 78.3979 | 4103 | 71 | 4103 | 15 | 6 | 40.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | het | 95.3582 | 96.2264 | 94.5055 | 96.7254 | 51 | 2 | 86 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | het | 96.2782 | 96.3158 | 96.2406 | 94.6853 | 183 | 7 | 256 | 10 | 4 | 40.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 37.5000 | 90.5882 | 0 | 0 | 3 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 84.8485 | 96.8116 | 0 | 0 | 28 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 86.8421 | 95.1157 | 0 | 0 | 33 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 86.8421 | 95.5083 | 0 | 0 | 33 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 87.1795 | 95.5017 | 0 | 0 | 34 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 5 | 2 | 40.0000 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.3899 | 96.9496 | 99.8736 | 43.2587 | 3941 | 124 | 3951 | 5 | 2 | 40.0000 | |