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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 495 496 497 498 499 500 501 502 503 ... 1720 1721 » 24901-24950 / 86044 show all
egarrison-hhga	SNP	tv	HG002complexvar	het	99.7360	99.5170	99.9560	21.2359	150003	728	150023	66	28	42.4242
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.7727	95.5114	96.0354	50.6248	5426	255	5426	224	95	42.4107
egarrison-hhga	SNP	*	map_l100_m2_e0	*	99.5430	99.2483	99.8395	64.7214	73408	556	73409	118	50	42.3729
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	84.1998	75.5674	95.0586	89.6740	1132	366	1135	59	25	42.3729
anovak-vg	INDEL	D1_5	map_l150_m0_e0	het	78.2898	82.6733	74.3478	93.3870	167	35	171	59	25	42.3729
ciseli-custom	INDEL	*	HG002complexvar	het	83.6520	81.8863	85.4955	58.3237	37838	8370	38019	6450	2732	42.3566
ndellapenna-hhga	SNP	*	map_l125_m2_e1	het	98.8584	98.0229	99.7083	70.3755	29054	586	29054	85	36	42.3529
qzeng-custom	INDEL	I6_15	HG002complexvar	*	92.2263	91.5275	92.9358	54.4267	4386	406	4473	340	144	42.3529
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	96.4780	96.5462	96.4099	50.7305	19176	686	28090	1046	443	42.3518
gduggal-bwavard	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	95.8975	95.7372	96.0584	69.6019	4649	207	4606	189	80	42.3280
anovak-vg	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	88.7047	91.7202	85.8812	83.6926	2426	219	2573	423	179	42.3168
anovak-vg	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.4369	98.7908	98.0854	58.8485	3840	47	3996	78	33	42.3077
anovak-vg	INDEL	D1_5	map_l250_m1_e0	het	72.2766	81.9820	64.6259	95.9781	91	20	95	52	22	42.3077
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	66.9912	56.0811	83.1715	93.2356	249	195	257	52	22	42.3077
jli-custom	SNP	tv	HG002complexvar	*	99.9252	99.8822	99.9683	21.9781	245862	290	245791	78	33	42.3077
jli-custom	SNP	tv	map_l250_m1_e0	*	97.9966	97.0155	98.9977	85.0101	2568	79	2568	26	11	42.3077
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7540	99.8860	99.6224	56.8960	7011	8	6859	26	11	42.3077
gduggal-bwaplat	SNP	ti	map_l150_m0_e0	*	58.2240	41.2034	99.2037	94.0967	3239	4622	3239	26	11	42.3077
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	96.4295	98.6456	94.3107	36.3510	437	6	431	26	11	42.3077
gduggal-bwaplat	INDEL	D6_15	*	het	87.6003	79.2874	97.8603	73.1960	9191	2401	9193	201	85	42.2886
anovak-vg	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	92.1744	93.3669	91.0119	70.2375	4448	316	4506	445	188	42.2472
ndellapenna-hhga	SNP	ti	HG002complexvar	het	99.7687	99.5752	99.9630	16.8677	313429	1337	313430	116	49	42.2414
anovak-vg	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	76.5009	82.6944	71.1705	83.8697	755	158	906	367	155	42.2343
qzeng-custom	INDEL	D6_15	HG002compoundhet	het	88.1260	94.5093	82.5504	31.0108	809	47	8558	1809	764	42.2333
qzeng-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	86.5263	95.4338	79.1396	59.8767	836	40	2318	611	258	42.2259
ciseli-custom	SNP	*	func_cds	homalt	99.2844	99.8567	98.7187	22.2148	6969	10	6934	90	38	42.2222
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7095	99.5789	99.8404	58.9584	28141	119	28144	45	19	42.2222
jpowers-varprowl	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	98.7867	98.9531	98.6209	43.1645	7278	77	7294	102	43	42.1569
gduggal-snapfb	INDEL	D1_5	HG002complexvar	*	94.7329	94.4337	95.0340	57.1180	30894	1821	31423	1642	692	42.1437
anovak-vg	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	95.7432	96.5626	94.9376	45.0963	11040	393	11177	596	251	42.1141
anovak-vg	INDEL	D1_5	map_l250_m2_e1	*	72.7100	74.5946	70.9184	96.2235	138	47	139	57	24	42.1053
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.9120	99.0753	98.7492	88.2866	1500	14	1500	19	8	42.1053
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5807	99.2754	99.8880	68.6524	16852	123	16941	19	8	42.1053
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5807	99.2754	99.8880	68.6524	16852	123	16941	19	8	42.1053
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	98.8678	98.2992	99.4430	40.4688	10230	177	10177	57	24	42.1053
eyeh-varpipe	SNP	*	map_l100_m0_e0	homalt	99.8121	99.7935	99.8307	65.9910	11596	24	11205	19	8	42.1053
eyeh-varpipe	INDEL	*	map_l150_m0_e0	het	96.4901	96.7742	96.2076	90.4879	330	11	482	19	8	42.1053
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	88.2072	85.3659	91.2442	83.3461	210	36	198	19	8	42.1053
ndellapenna-hhga	SNP	tv	map_l125_m2_e0	het	98.8271	98.0368	99.6302	69.6751	10237	205	10237	38	16	42.1053
rpoplin-dv42	INDEL	D1_5	map_l125_m1_e0	*	98.3020	98.3456	98.2585	85.8752	1070	18	1072	19	8	42.1053
rpoplin-dv42	INDEL	D1_5	map_l125_m2_e0	*	98.3836	98.4252	98.3421	86.5303	1125	18	1127	19	8	42.1053
rpoplin-dv42	INDEL	D1_5	map_l125_m2_e1	*	98.4031	98.4443	98.3621	86.6144	1139	18	1141	19	8	42.1053
mlin-fermikit	INDEL	D16_PLUS	map_l100_m1_e0	het	65.3674	67.3913	63.4615	92.2619	31	15	33	19	8	42.1053
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	83.8465	88.9667	79.2835	61.5799	508	63	509	133	56	42.1053
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	50.0000	39.0909	69.3548	97.6108	43	67	43	19	8	42.1053
ciseli-custom	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.0000	0.0000	29.6296	96.2238	0	0	8	19	8	42.1053
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7896	99.8368	99.7424	34.4616	7343	12	7358	19	8	42.1053
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.3735	99.2041	99.5436	81.7204	4113	33	4144	19	8	42.1053
cchapple-custom	INDEL	D6_15	map_siren	het	94.8724	94.6429	95.1031	81.6462	265	15	369	19	8	42.1053
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.6014	99.4125	97.8035	88.8214	846	5	846	19	8	42.1053

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