PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 494 495 496 497 498 499 500 501 502 ... 1720 1721 » 24851-24900 / 86044 show all
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.4084	97.8691	98.9537	78.0007	643	14	662	7	3	42.8571
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6996	99.6713	99.7279	30.4782	2729	9	2566	7	3	42.8571
gduggal-bwaplat	SNP	*	map_l150_m0_e0	*	57.1530	40.1263	99.2803	94.5754	4828	7204	4828	35	15	42.8571
gduggal-bwavard	SNP	tv	func_cds	*	99.0223	98.5358	99.5136	36.8583	4307	64	4296	21	9	42.8571
gduggal-bwavard	SNP	tv	func_cds	het	99.0001	98.7956	99.2054	42.2421	2625	32	2622	21	9	42.8571
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	53.8091	57.5758	50.5051	84.7692	76	56	50	49	21	42.8571
egarrison-hhga	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3357	98.9921	99.6817	59.1116	35062	357	35070	112	48	42.8571
egarrison-hhga	SNP	*	map_l100_m0_e0	het	99.1151	98.5051	99.7326	69.3594	20888	317	20889	56	24	42.8571
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5483	99.3850	99.7121	48.3425	2424	15	2424	7	3	42.8571
egarrison-hhga	SNP	tv	map_l250_m0_e0	*	97.8160	96.6013	99.0617	92.0849	739	26	739	7	3	42.8571
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	51.8908	43.1818	65.0000	89.0710	19	25	13	7	3	42.8571
ckim-isaac	INDEL	D1_5	map_l150_m1_e0	*	76.6610	62.7615	98.4683	90.0131	450	267	450	7	3	42.8571
ckim-isaac	INDEL	D1_5	map_l150_m2_e0	*	76.9968	63.1717	98.5685	90.5306	482	281	482	7	3	42.8571
ckim-isaac	INDEL	D1_5	map_l150_m2_e1	*	76.8627	62.9820	98.5915	90.5369	490	288	490	7	3	42.8571
ckim-isaac	SNP	ti	segdup	*	98.3830	96.8521	99.9630	86.8421	18922	615	18922	7	3	42.8571
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.3958	98.0100	98.7847	73.2093	591	12	569	7	3	42.8571
dgrover-gatk	INDEL	*	map_l100_m2_e0	homalt	99.0099	99.1277	98.8924	84.9649	1250	11	1250	14	6	42.8571
dgrover-gatk	INDEL	*	map_l100_m2_e1	homalt	99.0253	99.1413	98.9097	85.0193	1270	11	1270	14	6	42.8571
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.2176	99.5759	93.0785	81.7232	5400	23	5406	402	172	42.7861
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.2176	99.5759	93.0785	81.7232	5400	23	5406	402	172	42.7861
gduggal-snapfb	SNP	*	map_l125_m2_e1	het	96.4602	97.5843	95.3616	73.5220	28924	716	28927	1407	602	42.7861
gduggal-snapvard	INDEL	D1_5	map_siren	het	89.3607	98.0237	82.1046	85.3259	2232	45	2606	568	243	42.7817
anovak-vg	SNP	tv	segdup	*	97.7325	97.6676	97.7974	93.3295	8333	199	8303	187	80	42.7807
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	82.3435	83.6876	81.0419	74.6270	3032	591	3018	706	302	42.7762
rpoplin-dv42	SNP	tv	map_siren	het	99.4388	99.4093	99.4683	57.2644	28440	169	28436	152	65	42.7632
ndellapenna-hhga	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2273	98.7916	99.6668	58.8530	34991	428	34997	117	50	42.7350
gduggal-snapfb	SNP	*	map_l125_m2_e0	*	96.9292	96.9758	96.8828	74.5886	45310	1413	45314	1458	623	42.7298
ndellapenna-hhga	SNP	*	HG002complexvar	het	99.7473	99.5353	99.9601	18.3091	463334	2163	463353	185	79	42.7027
ckim-isaac	INDEL	I6_15	HG002complexvar	*	77.4674	68.9900	88.3200	51.9231	3306	1486	3312	438	187	42.6941
egarrison-hhga	INDEL	*	map_l100_m2_e0	het	97.5246	97.9627	97.0903	84.4521	2260	47	2269	68	29	42.6471
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	82.7904	78.6275	87.4187	53.2630	15617	4245	16259	2340	997	42.6068
gduggal-bwafb	SNP	*	HG002complexvar	*	99.8109	99.7664	99.8554	20.0831	752623	1762	752783	1090	464	42.5688
gduggal-bwavard	INDEL	D16_PLUS	map_l100_m1_e0	het	60.6733	86.9565	46.5909	92.8397	40	6	41	47	20	42.5532
gduggal-snapfb	SNP	*	map_l125_m2_e1	*	96.9532	97.0065	96.9000	74.6410	45789	1413	45793	1465	623	42.5256
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	85.6204	89.4628	82.0945	59.1015	866	102	2728	595	253	42.5210
asubramanian-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.4217	98.4028	98.4406	75.5838	47500	771	49303	781	332	42.5096
anovak-vg	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	92.5559	94.4948	90.6950	66.9104	2918	170	3119	320	136	42.5000
ndellapenna-hhga	SNP	*	map_l150_m0_e0	het	98.0583	96.6751	99.4816	79.2753	7676	264	7676	40	17	42.5000
mlin-fermikit	INDEL	*	map_l125_m1_e0	het	66.1838	50.9363	94.4598	80.5181	680	655	682	40	17	42.5000
ltrigg-rtg1	INDEL	*	HG002complexvar	het	98.9136	98.2515	99.5847	53.0906	45404	808	44604	186	79	42.4731
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.5832	95.9437	99.2798	56.3557	30134	1274	30188	219	93	42.4658
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.5832	95.9437	99.2798	56.3557	30134	1274	30188	219	93	42.4658
rpoplin-dv42	SNP	tv	*	*	99.9512	99.9420	99.9604	21.8980	969128	562	969027	384	163	42.4479
rpoplin-dv42	INDEL	*	map_l125_m2_e1	*	98.0600	97.6180	98.5061	98.7184	2172	53	2176	33	14	42.4242
jli-custom	SNP	tv	HG002compoundhet	*	99.6414	99.6526	99.6301	48.9851	8892	31	8889	33	14	42.4242
gduggal-snapplat	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	92.2399	86.3055	99.0506	51.0836	3441	546	3443	33	14	42.4242
hfeng-pmm2	SNP	*	map_l125_m1_e0	homalt	99.8078	99.8107	99.8048	66.6048	16873	32	16873	33	14	42.4242
hfeng-pmm2	SNP	*	map_l125_m2_e0	homalt	99.8130	99.8158	99.8101	69.0538	17343	32	17343	33	14	42.4242
hfeng-pmm2	SNP	*	map_l125_m2_e1	homalt	99.8146	99.8175	99.8118	69.0869	17500	32	17500	33	14	42.4242
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7641	99.8350	99.6932	57.1024	10893	18	10724	33	14	42.4242

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge