PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24501-24550 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | het | 95.9914 | 97.0526 | 94.9532 | 68.8933 | 20580 | 625 | 20583 | 1094 | 492 | 44.9726 | |
| ltrigg-rtg2 | SNP | ti | HG002complexvar | * | 99.8779 | 99.7988 | 99.9570 | 17.4272 | 507413 | 1023 | 507316 | 218 | 98 | 44.9541 | |
| egarrison-hhga | SNP | * | map_l100_m1_e0 | * | 99.5435 | 99.2404 | 99.8485 | 62.8269 | 71853 | 550 | 71854 | 109 | 49 | 44.9541 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e1 | * | 97.2360 | 96.8584 | 97.6165 | 97.7206 | 3638 | 118 | 3645 | 89 | 40 | 44.9438 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.4760 | 95.9242 | 91.1498 | 55.7793 | 14168 | 602 | 14151 | 1374 | 617 | 44.9054 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.0678 | 85.5096 | 90.7838 | 68.5024 | 1074 | 182 | 1054 | 107 | 48 | 44.8598 | |
| asubramanian-gatk | INDEL | * | HG002complexvar | * | 98.8559 | 98.4299 | 99.2857 | 62.5855 | 75730 | 1208 | 75611 | 544 | 244 | 44.8529 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 89.0395 | 80.9340 | 98.9493 | 51.2411 | 5459 | 1286 | 5462 | 58 | 26 | 44.8276 | |
| qzeng-custom | SNP | ti | HG002complexvar | * | 99.1315 | 98.4529 | 99.8194 | 18.2769 | 500571 | 7866 | 493623 | 893 | 400 | 44.7928 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | het | 94.2359 | 95.6873 | 92.8278 | 87.5230 | 4970 | 224 | 4970 | 384 | 172 | 44.7917 | |
| astatham-gatk | SNP | ti | map_siren | het | 90.2825 | 82.3747 | 99.8698 | 61.4644 | 51387 | 10995 | 51378 | 67 | 30 | 44.7761 | |
| qzeng-custom | INDEL | * | HG002complexvar | * | 97.6731 | 97.4200 | 97.9274 | 54.9567 | 74953 | 1985 | 77253 | 1635 | 731 | 44.7095 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | * | 97.3112 | 96.9402 | 97.6852 | 97.7103 | 3580 | 113 | 3587 | 85 | 38 | 44.7059 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e1 | * | 94.6649 | 94.5286 | 94.8016 | 89.9551 | 7550 | 437 | 7550 | 414 | 185 | 44.6860 | |
| ckim-dragen | SNP | ti | HG002complexvar | het | 99.9189 | 99.9266 | 99.9111 | 17.5776 | 314535 | 231 | 314661 | 280 | 125 | 44.6429 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.6796 | 92.5249 | 90.8497 | 49.7124 | 557 | 45 | 556 | 56 | 25 | 44.6429 | |
| qzeng-custom | INDEL | * | * | het | 97.1762 | 98.2811 | 96.0960 | 58.8639 | 190796 | 3337 | 217691 | 8844 | 3946 | 44.6178 | |
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.0062 | 96.7177 | 99.3296 | 54.4844 | 19536 | 663 | 19261 | 130 | 58 | 44.6154 | |
| gduggal-snapplat | SNP | ti | map_l250_m0_e0 | * | 85.2021 | 77.7372 | 94.2529 | 96.3701 | 1065 | 305 | 1066 | 65 | 29 | 44.6154 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 52.7266 | 38.0507 | 85.8309 | 70.4516 | 6106 | 9941 | 5785 | 955 | 426 | 44.6073 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.7464 | 96.2737 | 87.6259 | 45.7712 | 3152 | 122 | 8703 | 1229 | 548 | 44.5891 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6542 | 98.2774 | 99.0338 | 56.4448 | 16146 | 283 | 16093 | 157 | 70 | 44.5860 | |
| ckim-gatk | SNP | ti | HG002complexvar | * | 99.5943 | 99.2243 | 99.9671 | 17.9110 | 504492 | 3944 | 504432 | 166 | 74 | 44.5783 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 72.7114 | 67.5333 | 78.7495 | 70.8829 | 2026 | 974 | 2179 | 588 | 262 | 44.5578 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.5830 | 94.5931 | 94.5728 | 62.5553 | 1732 | 99 | 1760 | 101 | 45 | 44.5545 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | * | 96.4309 | 96.3734 | 96.4883 | 71.4997 | 31650 | 1191 | 31653 | 1152 | 513 | 44.5312 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e1 | het | 94.2221 | 95.7257 | 92.7651 | 87.6052 | 5039 | 225 | 5039 | 393 | 175 | 44.5293 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.3614 | 99.5206 | 93.3967 | 80.5951 | 5397 | 26 | 5403 | 382 | 170 | 44.5026 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.3614 | 99.5206 | 93.3967 | 80.5951 | 5397 | 26 | 5403 | 382 | 170 | 44.5026 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 93.8698 | 91.3024 | 96.5857 | 72.7788 | 6078 | 579 | 6167 | 218 | 97 | 44.4954 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.9870 | 92.7725 | 99.4322 | 50.3135 | 1566 | 122 | 1576 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5993 | 99.5000 | 99.6988 | 76.7994 | 2985 | 15 | 2979 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 96.3989 | 44 | 2 | 43 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.9670 | 95.8333 | 83.0189 | 96.8187 | 46 | 2 | 44 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e1 | het | 89.5935 | 96.0784 | 83.9286 | 96.7136 | 49 | 2 | 47 | 9 | 4 | 44.4444 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 84.3305 | 80.0000 | 89.1566 | 86.2583 | 76 | 19 | 74 | 9 | 4 | 44.4444 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.2319 | 85.0000 | 87.5000 | 86.9801 | 136 | 24 | 126 | 18 | 8 | 44.4444 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 83.7209 | 87.8049 | 80.0000 | 82.0000 | 36 | 5 | 36 | 9 | 4 | 44.4444 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.6351 | 98.0293 | 99.2485 | 64.1671 | 9501 | 191 | 9509 | 72 | 32 | 44.4444 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | * | 99.5683 | 99.2846 | 99.8537 | 64.5157 | 49131 | 354 | 49132 | 72 | 32 | 44.4444 | |
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | * | 98.7333 | 97.8816 | 99.6000 | 88.1610 | 4482 | 97 | 4482 | 18 | 8 | 44.4444 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | * | 99.2922 | 98.8287 | 99.7600 | 74.2574 | 11222 | 133 | 11222 | 27 | 12 | 44.4444 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | * | 99.3012 | 98.8437 | 99.7631 | 74.2719 | 11369 | 133 | 11369 | 27 | 12 | 44.4444 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5978 | 99.3202 | 99.8769 | 36.6057 | 7305 | 50 | 7301 | 9 | 4 | 44.4444 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4081 | 99.2523 | 99.5645 | 82.9173 | 4115 | 31 | 4115 | 18 | 8 | 44.4444 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6983 | 97.4954 | 97.9021 | 76.6822 | 2102 | 54 | 2100 | 45 | 20 | 44.4444 | |
| dgrover-gatk | INDEL | * | map_l125_m2_e0 | homalt | 98.8867 | 98.9515 | 98.8220 | 87.0968 | 755 | 8 | 755 | 9 | 4 | 44.4444 | |
| dgrover-gatk | INDEL | * | map_l125_m2_e1 | homalt | 98.9025 | 98.9664 | 98.8387 | 87.1943 | 766 | 8 | 766 | 9 | 4 | 44.4444 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8747 | 99.8104 | 99.9390 | 55.0186 | 14742 | 28 | 14744 | 9 | 4 | 44.4444 | |
| hfeng-pmm1 | INDEL | D16_PLUS | * | homalt | 99.2597 | 99.0544 | 99.4659 | 65.7799 | 1676 | 16 | 1676 | 9 | 4 | 44.4444 | |