PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23601-23650 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 95.9184 | 0 | 2 | 0 | 2 | 1 | 50.0000 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5189 | 99.8302 | 99.2095 | 64.3231 | 1764 | 3 | 1757 | 14 | 7 | 50.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.5681 | 83.3333 | 72.5490 | 91.3413 | 35 | 7 | 37 | 14 | 7 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1781 | 98.5667 | 99.7971 | 74.2130 | 2957 | 43 | 2951 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5541 | 99.2049 | 99.9057 | 74.5256 | 2121 | 17 | 2119 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2442 | 98.7151 | 99.7789 | 49.7012 | 3611 | 47 | 3611 | 8 | 4 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.6217 | 88.0000 | 91.3043 | 82.5095 | 44 | 6 | 42 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | homalt | 98.6220 | 98.4283 | 98.8166 | 82.4931 | 501 | 8 | 501 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m1_e0 | homalt | 98.9792 | 98.7775 | 99.1817 | 81.8155 | 1212 | 15 | 1212 | 10 | 5 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e1 | homalt | 98.1595 | 97.5610 | 98.7654 | 88.0266 | 480 | 12 | 480 | 6 | 3 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8350 | 97.9969 | 99.6875 | 54.5131 | 636 | 13 | 638 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2979 | 98.9492 | 99.6491 | 52.9703 | 565 | 6 | 568 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0155 | 98.2173 | 99.8268 | 66.0394 | 1157 | 21 | 1153 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.7429 | 98.1158 | 99.3780 | 55.1561 | 5624 | 108 | 5752 | 36 | 18 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4163 | 99.1347 | 99.6996 | 67.2044 | 2635 | 23 | 2655 | 8 | 4 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4816 | 99.3427 | 99.6209 | 60.8825 | 1058 | 7 | 1051 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.2736 | 99.5192 | 99.0291 | 72.9659 | 207 | 1 | 204 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3216 | 99.0347 | 99.6101 | 75.9719 | 513 | 5 | 511 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3383 | 99.0584 | 99.6198 | 77.9732 | 526 | 5 | 524 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3490 | 99.0741 | 99.6255 | 78.1237 | 535 | 5 | 532 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | homalt | 99.5854 | 99.3399 | 99.8321 | 73.3974 | 1204 | 8 | 1189 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002compoundhet | het | 93.1013 | 92.3077 | 93.9086 | 73.1973 | 192 | 16 | 185 | 12 | 6 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1242 | 97.2222 | 99.0431 | 59.4175 | 210 | 6 | 207 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1445 | 93.5484 | 98.8889 | 67.7996 | 174 | 12 | 178 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7995 | 99.6294 | 99.9702 | 32.6604 | 6720 | 25 | 6703 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7370 | 99.4951 | 99.9801 | 43.3493 | 10051 | 51 | 10045 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m0_e0 | * | 95.0820 | 91.0219 | 99.5211 | 84.7102 | 1247 | 123 | 1247 | 6 | 3 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.7426 | 65.3846 | 90.0000 | 93.5691 | 17 | 9 | 18 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.8477 | 64.7059 | 83.3333 | 95.1613 | 11 | 6 | 10 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | homalt | 99.7842 | 99.6199 | 99.9492 | 67.6001 | 3931 | 15 | 3932 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | homalt | 99.7915 | 99.6326 | 99.9509 | 70.3193 | 4068 | 15 | 4069 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | homalt | 99.7941 | 99.6372 | 99.9515 | 70.3259 | 4119 | 15 | 4123 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 71.4286 | 100.0000 | 55.5556 | 99.3767 | 5 | 0 | 5 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.6757 | 82.3529 | 70.0000 | 99.3709 | 14 | 3 | 14 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | * | map_siren | hetalt | 76.4268 | 62.3482 | 98.7179 | 84.3687 | 154 | 93 | 154 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2837 | 98.7939 | 99.7785 | 64.4068 | 901 | 11 | 901 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3066 | 98.4234 | 98.1900 | 73.3092 | 437 | 7 | 434 | 8 | 4 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.7492 | 96.8153 | 98.7013 | 59.0426 | 152 | 5 | 152 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.6940 | 96.7213 | 96.6667 | 70.2970 | 59 | 2 | 58 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 84.4720 | 78.1609 | 91.8919 | 88.8218 | 68 | 19 | 68 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.3636 | 82.6087 | 90.4762 | 90.4328 | 38 | 8 | 38 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.3295 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.7526 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.8367 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | * | 89.2193 | 83.9161 | 95.2381 | 89.8795 | 120 | 23 | 120 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0971 | 98.0315 | 98.1627 | 67.6020 | 747 | 15 | 748 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6717 | 99.6061 | 99.7373 | 45.9408 | 2276 | 9 | 2278 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2028 | 98.2005 | 98.2051 | 88.8460 | 764 | 14 | 766 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | * | 93.3333 | 91.3043 | 95.4545 | 97.5528 | 42 | 4 | 42 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.9351 | 97.0760 | 98.8095 | 95.1431 | 166 | 5 | 166 | 2 | 1 | 50.0000 | |