PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23451-23500 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3333 | 100.0000 | 96.7213 | 75.6000 | 61 | 0 | 59 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7343 | 95.5895 | 99.9775 | 64.8179 | 8886 | 410 | 8904 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9506 | 94.1018 | 99.9772 | 33.0820 | 8743 | 548 | 8785 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3809 | 98.8975 | 99.8690 | 76.5041 | 1525 | 17 | 1525 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1817 | 98.5900 | 99.7805 | 76.0326 | 909 | 13 | 909 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8141 | 93.8481 | 99.9738 | 26.3153 | 7597 | 498 | 7631 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.4702 | 95.0930 | 99.9692 | 25.5353 | 6492 | 335 | 6501 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.7869 | 93.7966 | 99.9740 | 28.5303 | 7666 | 507 | 7701 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9506 | 94.1018 | 99.9772 | 33.0820 | 8743 | 548 | 8785 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.5229 | 95.1931 | 99.9696 | 26.4607 | 6555 | 331 | 6568 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7626 | 99.5802 | 99.9456 | 54.3815 | 14708 | 62 | 14709 | 8 | 4 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002complexvar | hetalt | 97.4274 | 95.1629 | 99.8024 | 48.6555 | 964 | 49 | 1010 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.0017 | 96.1098 | 99.9695 | 34.1855 | 6547 | 265 | 6563 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7333 | 100.0000 | 99.4681 | 58.4530 | 374 | 0 | 374 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7093 | 100.0000 | 99.4203 | 56.2738 | 343 | 0 | 343 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.9841 | 96.0831 | 99.9618 | 27.3710 | 5225 | 213 | 5236 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.9370 | 95.9975 | 99.9565 | 25.8751 | 4581 | 191 | 4593 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5851 | 99.7230 | 99.4475 | 62.7955 | 360 | 1 | 360 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.5212 | 99.2593 | 97.7941 | 64.3045 | 268 | 2 | 266 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.2603 | 4 | 0 | 4 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.3333 | 4 | 0 | 4 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | segdup | * | 96.5517 | 96.5517 | 96.5517 | 97.0272 | 56 | 2 | 56 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | segdup | het | 97.2973 | 100.0000 | 94.7368 | 97.4717 | 37 | 0 | 36 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4583 | 99.5662 | 99.3506 | 78.2639 | 918 | 4 | 918 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7255 | 99.8168 | 99.6344 | 77.0842 | 545 | 1 | 545 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 64.0121 | 47.2505 | 99.2032 | 31.2329 | 232 | 259 | 249 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3532 | 99.3035 | 99.4030 | 66.0014 | 998 | 7 | 999 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7333 | 100.0000 | 99.4681 | 59.3074 | 374 | 0 | 374 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | hetalt | 94.5436 | 90.1493 | 99.3884 | 68.8275 | 302 | 33 | 325 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.5817 | 91.8058 | 99.6815 | 70.4887 | 605 | 54 | 626 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2963 | 96.2963 | 96.2963 | 89.2430 | 104 | 4 | 104 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 93.9867 | 89.1496 | 99.3789 | 58.6118 | 304 | 37 | 320 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.7137 | 90.5594 | 99.2674 | 55.9677 | 259 | 27 | 271 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.1959 | 89.4737 | 99.4444 | 63.3401 | 340 | 40 | 358 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.5817 | 91.8058 | 99.6815 | 70.4887 | 605 | 54 | 626 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.7739 | 90.6810 | 99.2537 | 66.3317 | 253 | 26 | 266 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.6710 | 18 | 0 | 18 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 95.6803 | 18 | 0 | 18 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_siren | homalt | 90.4762 | 90.4762 | 90.4762 | 95.1276 | 19 | 2 | 19 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.6744 | 97.1098 | 98.2456 | 68.8808 | 336 | 10 | 336 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6329 | 99.5598 | 99.7061 | 77.3995 | 1357 | 6 | 1357 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7906 | 99.7906 | 99.7906 | 80.4703 | 953 | 2 | 953 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1117 | 98.9729 | 99.2509 | 77.5593 | 1349 | 14 | 1325 | 10 | 5 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.3594 | 99.1723 | 99.5472 | 71.1298 | 2636 | 22 | 2638 | 12 | 6 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8067 | 99.5192 | 98.1043 | 80.8182 | 207 | 1 | 207 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.2759 | 100.0000 | 96.6102 | 85.5037 | 114 | 0 | 114 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.0854 | 99.3884 | 98.7842 | 83.4006 | 325 | 2 | 325 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.9751 | 99.1202 | 98.8304 | 84.6843 | 338 | 3 | 338 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.9811 | 99.1254 | 98.8372 | 84.8791 | 340 | 3 | 340 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4925 | 98.9899 | 98.0000 | 87.0718 | 196 | 2 | 196 | 4 | 2 | 50.0000 | |