PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23101-23150 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.8074 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D1_5 | HG002complexvar | het | 99.6962 | 99.5666 | 99.8262 | 56.4161 | 20675 | 90 | 20679 | 36 | 18 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7333 | 100.0000 | 99.4681 | 59.7861 | 374 | 0 | 374 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7093 | 100.0000 | 99.4203 | 57.5646 | 343 | 0 | 343 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 46.5116 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 77.1429 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_siren | homalt | 97.6744 | 96.9231 | 98.4375 | 84.0796 | 126 | 4 | 126 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 91.8239 | 24 | 0 | 24 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.0244 | 83.9080 | 94.8052 | 84.8425 | 73 | 14 | 73 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4887 | 91.5094 | 95.5556 | 87.2521 | 97 | 9 | 86 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.4291 | 95.0000 | 95.8621 | 89.7959 | 152 | 8 | 139 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.8750 | 95.8763 | 97.8947 | 75.5627 | 372 | 16 | 372 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | homalt | 93.0233 | 95.2381 | 90.9091 | 95.1111 | 20 | 1 | 20 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.3394 | 95.0151 | 97.7011 | 78.9127 | 629 | 33 | 595 | 14 | 7 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3451 | 96.0317 | 98.6949 | 65.7350 | 605 | 25 | 605 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1862 | 98.8261 | 99.5489 | 78.4824 | 1347 | 16 | 1324 | 6 | 3 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m0_e0 | * | 96.8948 | 94.3548 | 99.5754 | 80.7834 | 468 | 28 | 469 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | * | 95.5142 | 92.0415 | 99.2593 | 85.2378 | 266 | 23 | 268 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6680 | 98.1203 | 99.2218 | 79.3408 | 261 | 5 | 255 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | * | 80.7947 | 70.9302 | 93.8462 | 71.6157 | 61 | 25 | 61 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.8494 | 96.0631 | 99.7034 | 51.2998 | 6637 | 272 | 6724 | 20 | 10 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2265 | 98.7673 | 99.6899 | 57.2281 | 641 | 8 | 643 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3863 | 99.1243 | 99.6497 | 55.8050 | 566 | 5 | 569 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.1881 | 98.5569 | 99.8274 | 68.1681 | 1161 | 17 | 1157 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2308 | 97.0167 | 99.4755 | 56.4489 | 5561 | 171 | 5690 | 30 | 15 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.8149 | 98.0851 | 99.5556 | 59.5687 | 461 | 9 | 448 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0338 | 100.0000 | 98.0861 | 79.6693 | 208 | 0 | 205 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3235 | 99.4208 | 99.2263 | 79.9379 | 515 | 3 | 513 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3401 | 99.4350 | 99.2453 | 81.4685 | 528 | 3 | 526 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3504 | 99.4444 | 99.2565 | 81.6068 | 537 | 3 | 534 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.9474 | 44 | 0 | 44 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.7894 | 45 | 0 | 45 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.8443 | 46 | 0 | 46 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | homalt | 99.5850 | 99.5050 | 99.6653 | 76.7645 | 1206 | 6 | 1191 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6901 | 96.3664 | 99.0506 | 57.6833 | 1273 | 48 | 1252 | 12 | 6 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3617 | 97.6852 | 99.0476 | 60.3025 | 211 | 5 | 208 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 90.3389 | 86.2745 | 94.8052 | 93.0880 | 88 | 14 | 73 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e0 | * | 97.7096 | 95.7641 | 99.7358 | 83.5094 | 7551 | 334 | 7551 | 20 | 10 | 50.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | * | 97.7139 | 95.7932 | 99.7133 | 83.6180 | 7651 | 336 | 7651 | 22 | 11 | 50.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8066 | 99.6337 | 99.9801 | 44.8476 | 10065 | 37 | 10060 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m0_e0 | * | 95.9940 | 92.7007 | 99.5298 | 87.7555 | 1270 | 100 | 1270 | 6 | 3 | 50.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.8511 | 73.0769 | 90.4762 | 94.8655 | 19 | 7 | 19 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.9679 | 70.5882 | 84.6154 | 95.8861 | 12 | 5 | 11 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | * | 97.3892 | 95.1266 | 99.7620 | 81.0778 | 2518 | 129 | 2515 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.0769 | 99.9113 | 98.2563 | 59.2395 | 1127 | 1 | 1127 | 20 | 10 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7905 | 99.6747 | 99.9066 | 41.3311 | 2145 | 7 | 2140 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | homalt | 99.0173 | 99.2141 | 98.8212 | 82.1404 | 505 | 4 | 503 | 6 | 3 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | homalt | 98.9449 | 99.2958 | 98.5965 | 86.3047 | 282 | 2 | 281 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m1_e0 | homalt | 99.0909 | 100.0000 | 98.1982 | 94.0290 | 109 | 0 | 109 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e0 | homalt | 99.1379 | 100.0000 | 98.2906 | 94.5808 | 115 | 0 | 115 | 2 | 1 | 50.0000 | |