PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23051-23100 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | * | 86.6667 | 86.6667 | 86.6667 | 98.7923 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | het | 89.6552 | 92.8571 | 86.6667 | 98.0392 | 13 | 1 | 13 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.2353 | 88.2353 | 88.2353 | 98.6625 | 15 | 2 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 97.8481 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 85.7143 | 83.3333 | 88.2353 | 98.6688 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 97.8589 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m0_e0 | homalt | 96.5517 | 94.5946 | 98.5915 | 83.6217 | 140 | 8 | 140 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | homalt | 95.8084 | 94.1176 | 97.5610 | 87.9412 | 80 | 5 | 80 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m1_e0 | * | 93.8289 | 93.3054 | 94.3583 | 88.8610 | 669 | 48 | 669 | 40 | 20 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e0 | * | 94.0092 | 93.5780 | 94.4444 | 89.3939 | 714 | 49 | 714 | 42 | 21 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e1 | * | 93.7984 | 93.3162 | 94.2857 | 89.3910 | 726 | 52 | 726 | 44 | 22 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | * | 90.1099 | 89.1304 | 91.1111 | 97.6923 | 41 | 5 | 41 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | het | 89.5522 | 90.9091 | 88.2353 | 97.8358 | 30 | 3 | 30 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m1_e0 | het | 92.6606 | 90.9910 | 94.3925 | 96.3680 | 101 | 10 | 101 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | het | 93.2773 | 91.7355 | 94.8718 | 96.5022 | 111 | 10 | 111 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | het | 93.3333 | 91.8033 | 94.9153 | 96.5547 | 112 | 10 | 112 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.1429 | 4.0000 | 33.3333 | 86.3636 | 1 | 24 | 1 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 98.0998 | 22 | 2 | 22 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | het | 90.3226 | 93.3333 | 87.5000 | 98.4848 | 14 | 1 | 14 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m1_e0 | het | 89.0756 | 88.3333 | 89.8305 | 97.1036 | 53 | 7 | 53 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e0 | * | 90.4977 | 88.4956 | 92.5926 | 96.4167 | 100 | 13 | 100 | 8 | 4 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | * | 90.5830 | 88.5965 | 92.6606 | 96.5053 | 101 | 13 | 101 | 8 | 4 | 50.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2109 | 98.7915 | 99.6339 | 57.3510 | 1635 | 20 | 1633 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | * | 95.8482 | 92.5898 | 99.3443 | 64.3692 | 1212 | 97 | 1212 | 8 | 4 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.7936 | 91.4119 | 98.4351 | 78.0939 | 628 | 59 | 629 | 10 | 5 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.4143 | 93.5567 | 99.4521 | 72.2433 | 363 | 25 | 363 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 94.7291 | 91.0714 | 98.6928 | 74.8768 | 153 | 15 | 151 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6329 | 99.4764 | 99.7899 | 79.2908 | 950 | 5 | 950 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 98.9891 | 99.0792 | 98.8991 | 83.0903 | 538 | 5 | 539 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m1_e0 | * | 99.2513 | 98.9544 | 99.5499 | 81.4397 | 1325 | 14 | 1327 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 99.2302 | 98.9035 | 99.5591 | 82.7700 | 1353 | 15 | 1355 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 99.2452 | 98.9247 | 99.5677 | 82.8600 | 1380 | 15 | 1382 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_siren | homalt | 99.6709 | 99.8350 | 99.5074 | 76.9711 | 1210 | 2 | 1212 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.0935 | 93.2886 | 96.9697 | 75.4647 | 139 | 10 | 128 | 4 | 2 | 50.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8082 | 99.6679 | 99.9488 | 76.8939 | 3902 | 13 | 3902 | 2 | 1 | 50.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6996 | 93.7063 | 95.7143 | 92.5013 | 134 | 9 | 134 | 6 | 3 | 50.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.1456 | 96.0784 | 94.2308 | 92.3134 | 98 | 4 | 98 | 6 | 3 | 50.0000 | |
| jli-custom | SNP | ti | map_l250_m2_e0 | het | 97.8393 | 96.7117 | 98.9934 | 87.4744 | 3147 | 107 | 3147 | 32 | 16 | 50.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.8852 | 98.1818 | 97.5904 | 90.9635 | 162 | 3 | 162 | 4 | 2 | 50.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.6000 | 98.3871 | 96.8254 | 90.5405 | 122 | 2 | 122 | 4 | 2 | 50.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0852 | 99.0155 | 99.1549 | 88.3559 | 1408 | 14 | 1408 | 12 | 6 | 50.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9924 | 98.9924 | 98.9924 | 89.0195 | 786 | 8 | 786 | 8 | 4 | 50.0000 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7789 | 99.6438 | 99.9143 | 60.0480 | 6994 | 25 | 6992 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5824 | 99.4333 | 99.7320 | 76.7777 | 2983 | 17 | 2977 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6443 | 99.5626 | 99.7262 | 54.5715 | 3642 | 16 | 3642 | 10 | 5 | 50.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.6475 | 90.0000 | 91.3043 | 86.0606 | 45 | 5 | 42 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.3350 | 98.6248 | 98.0469 | 84.7483 | 502 | 7 | 502 | 10 | 5 | 50.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | homalt | 98.8497 | 98.8105 | 98.8889 | 84.7844 | 1246 | 15 | 1246 | 14 | 7 | 50.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | homalt | 98.8676 | 98.8290 | 98.9062 | 84.8287 | 1266 | 15 | 1266 | 14 | 7 | 50.0000 | |