PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23001-23050 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.5181 | 97.1512 | 99.9239 | 28.2478 | 2660 | 78 | 2627 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | * | tech_badpromoters | * | 93.2795 | 88.5350 | 98.5612 | 47.3485 | 139 | 18 | 137 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | * | tech_badpromoters | het | 93.2432 | 89.6104 | 97.1831 | 51.0345 | 69 | 8 | 69 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.7434 | 80.9524 | 84.6154 | 92.0408 | 34 | 8 | 33 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.6609 | 95.5759 | 99.8390 | 31.3433 | 1253 | 58 | 1240 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | homalt | 95.6116 | 94.1061 | 97.1660 | 88.8033 | 479 | 30 | 480 | 14 | 7 | 50.0000 | |
| gduggal-snapfb | INDEL | * | segdup | hetalt | 81.3718 | 74.6154 | 89.4737 | 97.2915 | 97 | 33 | 34 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 84.6154 | 0 | 0 | 0 | 4 | 2 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 64.5688 | 48.5114 | 96.5157 | 77.0400 | 277 | 294 | 277 | 10 | 5 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 64.8241 | 48.3146 | 98.4733 | 80.0000 | 129 | 138 | 129 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 64.8475 | 48.3254 | 98.5366 | 81.1754 | 404 | 432 | 404 | 6 | 3 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 80.2213 | 68.4783 | 96.8254 | 76.4045 | 63 | 29 | 61 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 62.7551 | 45.8955 | 99.1935 | 78.4909 | 246 | 290 | 246 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 60.2985 | 43.5345 | 98.0583 | 86.3666 | 202 | 262 | 202 | 4 | 2 | 50.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 60.3175 | 45.2381 | 90.4762 | 98.9340 | 19 | 23 | 19 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 88.3910 | 79.2549 | 99.9079 | 40.8013 | 2170 | 568 | 2170 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.4144 | 87.9771 | 99.5680 | 73.7230 | 461 | 63 | 461 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 63.4921 | 48.7805 | 90.9091 | 96.4630 | 20 | 21 | 20 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 60.0000 | 46.1538 | 85.7143 | 98.6805 | 12 | 14 | 12 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | decoy | * | 80.0000 | 80.0000 | 80.0000 | 99.9657 | 8 | 2 | 8 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | decoy | het | 78.9474 | 83.3333 | 75.0000 | 99.9698 | 5 | 1 | 6 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.6805 | 83.0746 | 99.8195 | 58.2831 | 1124 | 229 | 1106 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | homalt | 95.9985 | 93.5065 | 98.6270 | 83.6268 | 432 | 30 | 431 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e0 | homalt | 96.1607 | 93.7630 | 98.6842 | 84.8907 | 451 | 30 | 450 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e1 | homalt | 95.9235 | 93.2927 | 98.7069 | 84.9595 | 459 | 33 | 458 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 98.8636 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | homalt | 99.8506 | 99.8328 | 99.8684 | 64.9624 | 7761 | 13 | 7590 | 10 | 5 | 50.0000 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | homalt | 99.8314 | 99.7996 | 99.8632 | 71.9880 | 4482 | 9 | 4379 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.7015 | 100.0000 | 99.4048 | 74.4681 | 13 | 0 | 334 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 99.3243 | 100.0000 | 98.6577 | 87.6860 | 15 | 0 | 147 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5789 | 99.5842 | 99.5736 | 56.7742 | 479 | 2 | 467 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 99.3243 | 100.0000 | 98.6577 | 87.6860 | 15 | 0 | 147 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7927 | 99.7427 | 99.8427 | 56.7264 | 3877 | 10 | 3809 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | hetalt | 99.3548 | 100.0000 | 98.7179 | 69.3517 | 41 | 0 | 154 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e0 | hetalt | 99.3865 | 100.0000 | 98.7805 | 70.8703 | 42 | 0 | 162 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e1 | hetalt | 99.4012 | 100.0000 | 98.8095 | 70.6294 | 43 | 0 | 166 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m1_e0 | homalt | 99.8200 | 99.7782 | 99.8619 | 70.0620 | 5847 | 13 | 5785 | 8 | 4 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | homalt | 99.8247 | 99.7839 | 99.8655 | 72.1762 | 6004 | 13 | 5941 | 8 | 4 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | homalt | 99.8263 | 99.7860 | 99.8666 | 72.2636 | 6061 | 13 | 5990 | 8 | 4 | 50.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.2459 | 57.4713 | 90.3226 | 99.9104 | 50 | 37 | 56 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | func_cds | * | 98.7421 | 98.7421 | 98.7421 | 37.1542 | 157 | 2 | 157 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | func_cds | het | 98.8372 | 100.0000 | 97.7011 | 43.1373 | 85 | 0 | 85 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | * | 76.9231 | 71.4286 | 83.3333 | 98.3039 | 20 | 8 | 20 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | het | 82.0513 | 84.2105 | 80.0000 | 97.7778 | 16 | 3 | 16 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | * | 88.0000 | 91.6667 | 84.6154 | 98.9185 | 11 | 1 | 11 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 98.4743 | 9 | 0 | 9 | 2 | 1 | 50.0000 | |