PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22951-23000 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | ti | HG002compoundhet | hetalt | 99.8980 | 99.8273 | 99.9687 | 18.5958 | 578 | 1 | 6398 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7733 | 99.9091 | 99.6378 | 40.5384 | 2199 | 2 | 2201 | 8 | 4 | 50.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 57.1429 | 96.3565 | 0 | 0 | 32 | 24 | 12 | 50.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 75.4333 | 60.8225 | 99.2832 | 50.1786 | 281 | 181 | 277 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.8955 | 0 | 1 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwavard | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.8893 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 68.5368 | 52.3702 | 99.1416 | 33.0460 | 232 | 211 | 231 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m1_e0 | * | 85.7143 | 83.3333 | 88.2353 | 97.4203 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m1_e0 | het | 91.6667 | 100.0000 | 84.6154 | 97.7391 | 11 | 0 | 11 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e0 | * | 88.3721 | 86.3636 | 90.4762 | 97.1925 | 19 | 3 | 19 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.5460 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | * | 88.3721 | 86.3636 | 90.4762 | 97.2477 | 19 | 3 | 19 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | het | 93.3333 | 100.0000 | 87.5000 | 97.5904 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.0000 | 12.0000 | 60.0000 | 83.3333 | 3 | 22 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 62.9688 | 47.5410 | 93.2203 | 73.6607 | 58 | 64 | 55 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 43.7892 | 42.5926 | 45.0549 | 82.5000 | 46 | 62 | 41 | 50 | 25 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 52.1569 | 63.6364 | 44.1860 | 82.8000 | 42 | 24 | 38 | 48 | 24 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 20.6897 | 12.5000 | 60.0000 | 75.0000 | 3 | 21 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 38.3912 | 24.5902 | 87.5000 | 85.5856 | 15 | 46 | 14 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 7.6923 | 0.0000 | 97.8022 | 2 | 24 | 0 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 66.6667 | 0.0000 | 97.7011 | 2 | 1 | 0 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m0_e0 | * | 76.1905 | 72.7273 | 80.0000 | 91.2281 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m0_e0 | het | 82.3529 | 87.5000 | 77.7778 | 91.4286 | 7 | 1 | 7 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m1_e0 | * | 69.3878 | 65.3846 | 73.9130 | 90.4167 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 90.4110 | 15 | 3 | 15 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | * | 69.3878 | 65.3846 | 73.9130 | 91.8149 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 91.7969 | 15 | 3 | 15 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | * | 69.3878 | 65.3846 | 73.9130 | 91.9861 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 91.9847 | 15 | 3 | 15 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | * | 66.6667 | 66.6667 | 66.6667 | 93.2584 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | het | 75.0000 | 100.0000 | 60.0000 | 93.8272 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 94.8052 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 94.3662 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | * | 77.0833 | 78.7234 | 75.5102 | 94.6389 | 37 | 10 | 37 | 12 | 6 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | het | 75.8621 | 91.6667 | 64.7059 | 95.7500 | 22 | 2 | 22 | 12 | 6 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.2461 | 13.7546 | 75.0000 | 92.9078 | 37 | 232 | 30 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.7542 | 72.5490 | 75.0000 | 92.6740 | 37 | 14 | 30 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m0_e0 | homalt | 96.3229 | 94.7115 | 97.9899 | 73.6074 | 197 | 11 | 195 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.3420 | 95.5598 | 99.1919 | 72.4388 | 495 | 23 | 491 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.2112 | 95.2919 | 99.2095 | 74.5984 | 506 | 25 | 502 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.2587 | 95.3704 | 99.2233 | 74.6305 | 515 | 25 | 511 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.2529 | 93.1818 | 95.3488 | 91.6988 | 41 | 3 | 41 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e0 | homalt | 94.3820 | 93.3333 | 95.4545 | 92.6789 | 42 | 3 | 42 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.5055 | 93.4783 | 95.5556 | 92.6948 | 43 | 3 | 43 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_siren | homalt | 96.9037 | 94.3069 | 99.6476 | 66.3105 | 1143 | 69 | 1131 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m0_e0 | * | 65.7143 | 69.6970 | 62.1622 | 90.1857 | 23 | 10 | 23 | 14 | 7 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m0_e0 | het | 68.0851 | 94.1176 | 53.3333 | 91.3295 | 16 | 1 | 16 | 14 | 7 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | * | 72.2222 | 73.5849 | 70.9091 | 89.9818 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e0 | * | 72.2222 | 73.5849 | 70.9091 | 91.2141 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | * | 72.2222 | 73.5849 | 70.9091 | 91.4197 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |