PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22901-22950 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | * | 95.1788 | 93.1507 | 97.2973 | 90.6210 | 68 | 5 | 72 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | * | 95.0594 | 92.6829 | 97.5610 | 90.7240 | 76 | 6 | 80 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | * | 94.6014 | 91.7647 | 97.6190 | 90.6977 | 78 | 7 | 82 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.0000 | 12.0000 | 60.0000 | 70.5882 | 3 | 22 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 80.0000 | 0 | 1 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwafb | INDEL | I1_5 | func_cds | * | 98.6072 | 98.3333 | 98.8827 | 35.1449 | 177 | 3 | 177 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | func_cds | het | 97.5336 | 98.3051 | 96.7742 | 42.0561 | 58 | 1 | 60 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 63.6988 | 47.5728 | 96.3636 | 56.6929 | 98 | 108 | 53 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 81.8648 | 208 | 0 | 208 | 4 | 2 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8082 | 94.8864 | 98.8095 | 91.6584 | 167 | 9 | 166 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.7846 | 44 | 0 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 95.4938 | 45 | 0 | 45 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 95.5597 | 46 | 0 | 46 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_siren | het | 97.2030 | 95.6573 | 98.7995 | 79.6283 | 1608 | 73 | 1646 | 20 | 10 | 50.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.3848 | 95.6522 | 89.3333 | 91.3793 | 66 | 3 | 67 | 8 | 4 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 70.5882 | 60.0000 | 85.7143 | 99.7433 | 12 | 8 | 12 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 79.8928 | 67.1171 | 98.6755 | 71.9852 | 149 | 73 | 149 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 55.5556 | 40.0000 | 90.9091 | 92.7869 | 20 | 30 | 20 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | het | 93.7455 | 88.9495 | 99.0881 | 97.0073 | 1304 | 162 | 1304 | 12 | 6 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | het | 74.0091 | 59.8013 | 97.0717 | 73.7610 | 662 | 445 | 663 | 20 | 10 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 73.1222 | 57.8728 | 99.2832 | 78.7023 | 555 | 404 | 554 | 4 | 2 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 78.7591 | 65.2015 | 99.4350 | 82.5616 | 356 | 190 | 352 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 74.4454 | 59.6206 | 99.0826 | 87.0083 | 220 | 149 | 216 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 83.0598 | 71.3760 | 99.3174 | 53.6319 | 2910 | 1167 | 2910 | 20 | 10 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | homalt | 78.8991 | 65.3716 | 99.4859 | 87.5000 | 387 | 205 | 387 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | homalt | 79.4494 | 66.1211 | 99.5074 | 87.9739 | 404 | 207 | 404 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | homalt | 79.4574 | 66.1290 | 99.5146 | 88.0476 | 410 | 210 | 410 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 71.4286 | 59.8086 | 88.6525 | 84.5902 | 125 | 84 | 125 | 16 | 8 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.3267 | 77.8234 | 99.4737 | 73.5744 | 379 | 108 | 378 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 63.7102 | 48.2815 | 93.6306 | 83.3598 | 295 | 316 | 294 | 20 | 10 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 53.3937 | 39.8649 | 80.8219 | 88.1107 | 59 | 89 | 59 | 14 | 7 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 82.1997 | 70.3008 | 98.9474 | 87.7261 | 187 | 79 | 188 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002compoundhet | het | 45.1327 | 36.1702 | 60.0000 | 92.0635 | 17 | 30 | 18 | 12 | 6 | 50.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 42.4779 | 27.5862 | 92.3077 | 89.5161 | 24 | 63 | 24 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 65.0972 | 48.9985 | 96.9512 | 78.2925 | 318 | 331 | 318 | 10 | 5 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 75.6665 | 62.1622 | 96.6667 | 91.4651 | 23 | 14 | 58 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 35.9600 | 22.9630 | 82.8571 | 58.3333 | 31 | 104 | 29 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | * | 97.2110 | 97.1031 | 97.3190 | 85.5164 | 838 | 25 | 1089 | 30 | 15 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 57.3529 | 42.8571 | 86.6667 | 94.8980 | 6 | 8 | 13 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 72.7273 | 61.5385 | 88.8889 | 95.1872 | 8 | 5 | 16 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 72.1519 | 60.0000 | 90.4762 | 95.0237 | 9 | 6 | 19 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 72.1519 | 60.0000 | 90.4762 | 95.1501 | 9 | 6 | 19 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | func_cds | het | 97.4503 | 98.3051 | 96.6102 | 34.4444 | 58 | 1 | 57 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 58.8235 | 50.0000 | 71.4286 | 69.5652 | 1 | 1 | 5 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | het | 97.5753 | 96.8750 | 98.2857 | 85.5848 | 186 | 6 | 344 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | het | 97.5684 | 98.1132 | 97.0297 | 89.2267 | 104 | 2 | 196 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7839 | 99.8029 | 99.7650 | 51.9403 | 6076 | 12 | 5943 | 14 | 7 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | hetalt | 99.6622 | 100.0000 | 99.3266 | 65.7044 | 41 | 0 | 295 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e0 | hetalt | 99.6753 | 100.0000 | 99.3528 | 67.7116 | 42 | 0 | 307 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e1 | hetalt | 99.6805 | 100.0000 | 99.3631 | 67.6289 | 43 | 0 | 312 | 2 | 1 | 50.0000 | |