PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22851-22900 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | * | map_l250_m0_e0 | homalt | 92.0000 | 92.0000 | 92.0000 | 97.6482 | 23 | 2 | 23 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 63.1098 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 96.2963 | 95.5882 | 97.0149 | 96.9378 | 65 | 3 | 65 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3640 | 99.2519 | 99.4764 | 81.8355 | 398 | 3 | 380 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4819 | 99.6109 | 99.3532 | 78.1854 | 1536 | 6 | 1536 | 10 | 5 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4371 | 99.6241 | 99.2509 | 82.2473 | 265 | 1 | 265 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 46.9231 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.6990 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.9697 | 95.7265 | 98.2456 | 91.4286 | 112 | 5 | 112 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8750 | 96.8750 | 96.8750 | 92.8968 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.7742 | 95.2381 | 98.3607 | 91.6496 | 120 | 6 | 120 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 96.4539 | 95.7746 | 97.1429 | 92.9435 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 96.4143 | 94.5312 | 98.3740 | 91.7616 | 121 | 7 | 121 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 96.4539 | 95.7746 | 97.1429 | 93.0830 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.6277 | 95.1220 | 98.1818 | 88.6246 | 234 | 12 | 216 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2248 | 98.9691 | 99.4819 | 76.1286 | 384 | 4 | 384 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8024 | 98.8095 | 98.7952 | 79.2500 | 166 | 2 | 164 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5960 | 99.4864 | 99.7059 | 77.5541 | 1356 | 7 | 1356 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7906 | 99.7906 | 99.7906 | 80.5736 | 953 | 2 | 953 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.0731 | 66.0194 | 98.5612 | 58.3832 | 136 | 70 | 137 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5649 | 94.0520 | 99.2157 | 77.2930 | 253 | 16 | 253 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0618 | 95.9514 | 98.1982 | 81.3445 | 237 | 10 | 218 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1286 | 95.3020 | 96.9697 | 78.0731 | 142 | 7 | 128 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.5000 | 71.7391 | 97.0588 | 60.2339 | 66 | 26 | 66 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0861 | 98.4860 | 99.6935 | 62.3159 | 1301 | 20 | 1301 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 96.4286 | 94.7368 | 98.1818 | 87.9913 | 108 | 6 | 108 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 95.7265 | 94.9153 | 96.5517 | 88.7597 | 56 | 3 | 56 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 96.4912 | 94.8276 | 98.2143 | 88.8000 | 110 | 6 | 110 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 95.8678 | 95.0820 | 96.6667 | 89.2665 | 58 | 3 | 58 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 96.4912 | 94.8276 | 98.2143 | 89.0838 | 110 | 6 | 110 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.8678 | 95.0820 | 96.6667 | 89.5105 | 58 | 3 | 58 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.1260 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.3483 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.9379 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.9952 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 93.2039 | 90.5660 | 96.0000 | 93.1319 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 91.5254 | 90.0000 | 93.1034 | 93.1442 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_siren | het | 96.7972 | 95.1049 | 98.5507 | 86.9194 | 136 | 7 | 136 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9262 | 99.9016 | 99.9508 | 45.9204 | 4061 | 4 | 4061 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | ti | map_l250_m0_e0 | homalt | 98.7283 | 97.9358 | 99.5338 | 91.1982 | 427 | 9 | 427 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5758 | 97.5758 | 97.5758 | 91.1812 | 161 | 4 | 161 | 4 | 2 | 50.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.1888 | 97.5806 | 96.8000 | 90.9157 | 121 | 3 | 121 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.6508 | 89.3939 | 98.3333 | 77.6536 | 118 | 14 | 118 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | * | map_l100_m1_e0 | hetalt | 82.7545 | 71.7742 | 97.7011 | 88.8031 | 89 | 35 | 85 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | hetalt | 82.9138 | 72.0000 | 97.7273 | 89.6104 | 90 | 35 | 86 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | * | 89.1165 | 82.1705 | 97.3451 | 85.2480 | 212 | 46 | 220 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | * | 89.1561 | 82.1970 | 97.4026 | 85.7934 | 217 | 47 | 225 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | * | 88.0846 | 80.3636 | 97.4468 | 85.8519 | 221 | 54 | 229 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | * | 92.4000 | 89.3617 | 95.6522 | 92.1098 | 42 | 5 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | * | 93.9335 | 93.7500 | 94.1176 | 92.9752 | 30 | 2 | 32 | 2 | 1 | 50.0000 | |