PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22651-22700 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3879 | 98.8406 | 99.9413 | 37.5183 | 3410 | 40 | 3407 | 2 | 1 | 50.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1992 | 98.5033 | 99.9050 | 39.1794 | 2106 | 32 | 2103 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.5041 | 98.4993 | 96.5287 | 73.6731 | 722 | 11 | 723 | 26 | 13 | 50.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.6012 | 97.7642 | 91.6364 | 62.8378 | 481 | 11 | 504 | 46 | 23 | 50.0000 | |
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 94.5744 | 91.1290 | 98.2906 | 87.2964 | 113 | 11 | 115 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 94.6259 | 91.2000 | 98.3193 | 88.0762 | 114 | 11 | 117 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 94.5063 | 90.9091 | 98.4000 | 87.8758 | 120 | 12 | 123 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | * | map_l125_m0_e0 | homalt | 95.4296 | 91.9014 | 99.2395 | 89.4122 | 261 | 23 | 261 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | * | map_l150_m0_e0 | homalt | 94.6072 | 90.8537 | 98.6842 | 92.1080 | 149 | 15 | 150 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5423 | 98.2558 | 98.8304 | 81.6327 | 169 | 3 | 169 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.6694 | 97.7688 | 99.5868 | 58.0952 | 482 | 11 | 482 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.3149 | 97.4074 | 99.2395 | 64.1689 | 263 | 7 | 261 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.4760 | 97.5062 | 99.4652 | 82.0365 | 391 | 10 | 372 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 88.4723 | 80.0551 | 98.8675 | 51.9325 | 871 | 217 | 873 | 10 | 5 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 55.2147 | 41.6667 | 81.8182 | 76.5957 | 5 | 7 | 9 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 56.7073 | 45.5882 | 75.0000 | 86.4865 | 31 | 37 | 30 | 10 | 5 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 64.0000 | 53.3333 | 80.0000 | 81.4815 | 8 | 7 | 8 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | * | 35.2996 | 22.9885 | 76.0000 | 91.9094 | 20 | 67 | 19 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | het | 26.6667 | 17.3913 | 57.1429 | 93.5484 | 8 | 38 | 8 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | * | 35.8056 | 23.3333 | 76.9231 | 92.6346 | 21 | 69 | 20 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | het | 28.2353 | 18.7500 | 57.1429 | 94.4444 | 9 | 39 | 8 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | * | 37.7178 | 24.7423 | 79.3103 | 92.0330 | 24 | 73 | 23 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | het | 29.5567 | 19.6078 | 60.0000 | 94.2085 | 10 | 41 | 9 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | het | 29.1262 | 19.2308 | 60.0000 | 92.2840 | 15 | 63 | 15 | 10 | 5 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | * | 86.7257 | 84.4828 | 89.0909 | 92.1090 | 49 | 9 | 49 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | het | 86.4020 | 89.1892 | 83.7838 | 91.6290 | 33 | 4 | 31 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 93.4806 | 90.2724 | 96.9252 | 69.0862 | 1392 | 150 | 1387 | 44 | 22 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9528 | 97.9466 | 99.9799 | 52.0162 | 9969 | 209 | 9970 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | * | 78.8546 | 65.8088 | 98.3516 | 87.2415 | 716 | 372 | 716 | 12 | 6 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e0 | * | 79.3734 | 66.4917 | 98.4456 | 87.8826 | 760 | 383 | 760 | 12 | 6 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | * | 79.3602 | 66.4650 | 98.4635 | 87.9214 | 769 | 388 | 769 | 12 | 6 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_siren | homalt | 85.4065 | 74.6575 | 99.7712 | 71.3349 | 872 | 296 | 872 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 83.1169 | 74.4186 | 94.1176 | 57.5000 | 32 | 11 | 32 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 80.1478 | 69.6970 | 94.2857 | 75.1773 | 23 | 10 | 33 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 66.2956 | 51.4563 | 93.1624 | 81.5748 | 106 | 100 | 109 | 8 | 4 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 84.3750 | 77.1429 | 93.1034 | 76.8000 | 27 | 8 | 27 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.9091 | 93.7500 | 88.2353 | 65.3061 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 72.3288 | 59.4595 | 92.3077 | 71.1111 | 22 | 15 | 24 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.2624 | 91.6185 | 90.9091 | 64.6231 | 317 | 29 | 320 | 32 | 16 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 91.7626 | 87.4564 | 96.5147 | 48.4959 | 5013 | 719 | 5040 | 182 | 91 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.9365 | 51.9417 | 98.1651 | 46.0396 | 107 | 99 | 107 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 64.5069 | 48.0447 | 98.1308 | 30.0654 | 86 | 93 | 105 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.9784 | 94.5248 | 99.5628 | 57.7562 | 915 | 53 | 911 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | homalt | 78.8863 | 65.6371 | 98.8372 | 75.6719 | 340 | 178 | 340 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e0 | homalt | 79.0960 | 65.9134 | 98.8701 | 77.8750 | 350 | 181 | 350 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | het | 81.9608 | 69.8997 | 99.0521 | 91.9924 | 209 | 90 | 209 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | het | 82.4197 | 70.5502 | 99.0909 | 92.6224 | 218 | 91 | 218 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | het | 82.5046 | 70.6625 | 99.1150 | 92.6095 | 224 | 93 | 224 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_siren | homalt | 84.1104 | 72.9373 | 99.3258 | 73.3293 | 884 | 328 | 884 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.3433 | 50.9434 | 99.3151 | 42.0635 | 270 | 260 | 290 | 2 | 1 | 50.0000 | |