PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22451-22500 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | * | map_l250_m0_e0 | homalt | 62.2222 | 56.0000 | 70.0000 | 98.0411 | 14 | 11 | 14 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 55.5556 | 96.1207 | 0 | 0 | 5 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 94.8276 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | het | 99.7716 | 99.6866 | 99.8566 | 58.0913 | 18132 | 57 | 18110 | 26 | 13 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4113 | 99.1196 | 99.7048 | 77.3525 | 1351 | 12 | 1351 | 4 | 2 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6855 | 99.5812 | 99.7901 | 80.3667 | 951 | 4 | 951 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7206 | 65.5340 | 98.5507 | 56.6038 | 135 | 71 | 136 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5939 | 97.9738 | 99.2218 | 68.0216 | 3820 | 79 | 3825 | 30 | 15 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.3668 | 91.8216 | 99.1968 | 76.6417 | 247 | 22 | 247 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.9506 | 73.9130 | 97.1429 | 57.8313 | 68 | 24 | 68 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5840 | 97.5019 | 99.6904 | 61.7751 | 1288 | 33 | 1288 | 4 | 2 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 92.3077 | 90.9091 | 93.7500 | 93.5223 | 30 | 3 | 30 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 91.4286 | 94.1176 | 88.8889 | 94.6903 | 16 | 1 | 16 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.0212 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 84.2105 | 88.8889 | 80.0000 | 96.2264 | 8 | 1 | 8 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 92.0000 | 92.0000 | 92.0000 | 96.0000 | 23 | 2 | 23 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 90.3226 | 93.3333 | 87.5000 | 96.2791 | 14 | 1 | 14 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 92.0000 | 92.0000 | 92.0000 | 96.4689 | 23 | 2 | 23 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 90.3226 | 93.3333 | 87.5000 | 96.6805 | 14 | 1 | 14 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 92.5926 | 92.5926 | 92.5926 | 96.3215 | 25 | 2 | 25 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 96.5932 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_siren | homalt | 98.3425 | 98.8889 | 97.8022 | 85.3462 | 89 | 1 | 89 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | * | map_l100_m0_e0 | homalt | 76.2549 | 61.6437 | 99.9442 | 71.4939 | 7163 | 4457 | 7163 | 4 | 2 | 50.0000 | |
| ckim-gatk | SNP | * | map_l150_m1_e0 | homalt | 71.6189 | 55.8059 | 99.9365 | 80.2510 | 6291 | 4982 | 6291 | 4 | 2 | 50.0000 | |
| ckim-gatk | SNP | * | map_l150_m2_e0 | homalt | 72.5580 | 56.9536 | 99.9400 | 81.6478 | 6663 | 5036 | 6663 | 4 | 2 | 50.0000 | |
| ckim-gatk | SNP | * | map_l150_m2_e1 | homalt | 72.6891 | 57.1151 | 99.9408 | 81.5997 | 6755 | 5072 | 6755 | 4 | 2 | 50.0000 | |
| ckim-gatk | SNP | ti | map_l125_m0_e0 | homalt | 69.8436 | 53.6851 | 99.9171 | 79.2054 | 2411 | 2080 | 2411 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.9512 | 96.3636 | 97.5460 | 90.9595 | 159 | 6 | 159 | 4 | 2 | 50.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3563 | 95.9677 | 96.7480 | 90.6535 | 119 | 5 | 119 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | * | func_cds | * | 97.5940 | 95.7303 | 99.5316 | 35.2049 | 426 | 19 | 425 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | * | func_cds | het | 97.8678 | 96.7290 | 99.0338 | 42.5000 | 207 | 7 | 205 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.5480 | 97.7849 | 99.3232 | 55.6830 | 27634 | 626 | 27589 | 188 | 94 | 50.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | homalt | 77.3702 | 63.3880 | 99.2665 | 77.2272 | 812 | 469 | 812 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | * | segdup | homalt | 97.0085 | 94.5833 | 99.5614 | 90.4632 | 908 | 52 | 908 | 4 | 2 | 50.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 4.0816 | 2.1739 | 33.3333 | 62.5000 | 2 | 90 | 2 | 4 | 2 | 50.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 16.6667 | 11.1111 | 33.3333 | 57.1429 | 1 | 8 | 2 | 4 | 2 | 50.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 77.7778 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | homalt | 74.4681 | 71.4286 | 77.7778 | 91.4286 | 5 | 2 | 7 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e0 | homalt | 74.4681 | 71.4286 | 77.7778 | 92.8000 | 5 | 2 | 7 | 2 | 1 | 50.0000 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.9087 | 96.8629 | 96.9546 | 55.9921 | 5990 | 194 | 6049 | 190 | 95 | 50.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 74.0741 | 66.6667 | 83.3333 | 95.0000 | 10 | 5 | 10 | 2 | 1 | 50.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.2174 | 71.4286 | 60.0000 | 94.8454 | 5 | 2 | 6 | 4 | 2 | 50.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 66.6667 | 66.6667 | 95.5556 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.4648 | 98.0952 | 98.8372 | 65.8730 | 515 | 10 | 510 | 6 | 3 | 50.0000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.9824 | 97.9405 | 98.0243 | 36.9430 | 1284 | 27 | 1290 | 26 | 13 | 50.0000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 94.5205 | 1 | 0 | 2 | 2 | 1 | 50.0000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 100.0000 | 50.0000 | 93.3333 | 1 | 0 | 2 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5798 | 99.5507 | 99.6089 | 75.0780 | 5096 | 23 | 5094 | 20 | 10 | 50.0000 | |
| astatham-gatk | INDEL | * | map_l250_m0_e0 | homalt | 94.1176 | 96.0000 | 92.3077 | 97.4806 | 24 | 1 | 24 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4418 | 98.9742 | 99.9138 | 61.4203 | 6947 | 72 | 6953 | 6 | 3 | 50.0000 | |