PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2201-2250 / 86044 show all
ltrigg-rtg1SNP*map_l250_m2_e1homalt
99.6317
99.5217
99.7419
87.3537
270513270577
100.0000
ltrigg-rtg1SNP*map_sirenhetalt
98.7805
100.0000
97.5904
66.8000
8108122
100.0000
ltrigg-rtg1SNP*segduphomalt
99.7351
99.9348
99.5361
88.6997
107367107295050
100.0000
ltrigg-rtg1SNPti*hetalt
99.0637
99.8282
98.3108
41.4441
58115821010
100.0000
ltrigg-rtg1SNPtiHG002complexvarhetalt
99.0419
99.5169
98.5714
36.3636
206120733
100.0000
ltrigg-rtg1SNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.0944
98.2843
99.9179
60.1440
120321121711
100.0000
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
92.8571
100.0000
86.6667
87.0690
1201322
100.0000
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
92.8571
100.0000
86.6667
87.0690
1201322
100.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.7763
99.6011
99.9520
41.2692
624325625333
100.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7289
99.5326
99.9260
41.7636
404619405233
100.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
80.3022
68.5714
96.8750
88.4058
24113111
100.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
99.9299
99.9300
24.2713
14261142811
100.0000
ltrigg-rtg1SNPtimap_l100_m0_e0homalt
99.7102
99.5884
99.8324
61.6545
77423277421313
100.0000
ltrigg-rtg1SNPtimap_l100_m1_e0homalt
99.8050
99.7216
99.8885
59.4316
1791050179102020
100.0000
ltrigg-rtg1SNPtimap_l100_m2_e0homalt
99.8005
99.7214
99.8796
61.9278
1825851182582222
100.0000
ltrigg-rtg1SNPtimap_l100_m2_e1homalt
99.8025
99.7242
99.8809
61.9106
1844351184432222
100.0000
ltrigg-rtg1SNPtimap_l125_m0_e0homalt
99.6656
99.5324
99.7991
68.6301
447021447099
100.0000
ltrigg-rtg1SNPtimap_l125_m1_e0homalt
99.7461
99.6016
99.8910
65.4505
1100144110011212
100.0000
ltrigg-rtg1SNPtimap_l125_m2_e0homalt
99.7531
99.6126
99.8940
67.9785
1131444113141212
100.0000
ltrigg-rtg1SNPtimap_l125_m2_e1homalt
99.7553
99.6160
99.8950
68.0185
1141444114151212
100.0000
ltrigg-rtg1SNPtimap_l150_m0_e0homalt
99.5282
99.3481
99.7091
74.5205
274318274288
100.0000
ltrigg-rtg1SNPtimap_l150_m1_e0homalt
99.6993
99.5496
99.8494
70.3647
72943372951111
100.0000
ltrigg-rtg1SNPtimap_l150_m2_e0homalt
99.7107
99.5667
99.8552
72.6188
75833375841111
100.0000
ltrigg-rtg1SNPtimap_l150_m2_e1homalt
99.7136
99.5710
99.8566
72.6687
76603376621111
100.0000
ltrigg-rtg1SNPtimap_l250_m0_e0homalt
99.4273
99.5413
99.3135
91.3104
434243433
100.0000
ltrigg-rtg1SNPtimap_l250_m1_e0homalt
99.6262
99.5022
99.7505
86.3540
15998159944
100.0000
ltrigg-rtg1SNPtimap_l250_m2_e0homalt
99.6280
99.5426
99.7136
87.3322
17418174155
100.0000
ltrigg-rtg1SNPtimap_l250_m2_e1homalt
99.6047
99.5485
99.6610
87.3743
17648176466
100.0000
ltrigg-rtg1SNPtimap_sirenhetalt
98.2759
100.0000
96.6102
66.2857
5705722
100.0000
ltrigg-rtg1SNPtisegduphomalt
99.7604
99.9334
99.5880
88.0751
7500574943131
100.0000
ltrigg-rtg1SNPtv*hetalt
99.2007
99.6556
98.7500
40.5405
86838691111
100.0000
ltrigg-rtg1SNPtvHG002complexvarhetalt
98.8749
99.0323
98.7179
36.8421
307330844
100.0000
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
94.1176
100.0000
88.8889
88.6792
1501622
100.0000
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.1176
100.0000
88.8889
88.6792
1501622
100.0000
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.7712
99.9233
31.1675
13083130211
100.0000
ltrigg-rtg1SNPtvmap_l125_m0_e0homalt
99.7971
99.6398
99.9548
70.1295
22138221311
100.0000
ltrigg-rtg1SNPtvmap_l125_m1_e0homalt
99.8377
99.7440
99.9316
65.7995
584515584644
100.0000
ltrigg-rtg1SNPtvmap_l125_m2_e0homalt
99.8420
99.7507
99.9334
68.3459
600215600344
100.0000
ltrigg-rtg1SNPtvmap_l125_m2_e1homalt
99.8435
99.7530
99.9341
68.3791
605915606544
100.0000
ltrigg-rtg1SNPtvmap_l150_m0_e0homalt
99.6981
99.4729
99.9244
76.2016
13217132111
100.0000
ltrigg-rtg1SNPtvmap_l150_m1_e0homalt
99.8478
99.7466
99.9492
70.2200
393610393722
100.0000
ltrigg-rtg1SNPtvmap_l150_m2_e0homalt
99.8529
99.7551
99.9509
72.6094
407310407422
100.0000
ltrigg-rtg1SNPtvmap_l150_m2_e1homalt
99.8426
99.7339
99.9516
72.6103
412311412722
100.0000
ltrigg-rtg1SNPtvmap_l250_m1_e0homalt
99.6487
99.4159
99.8826
86.0259
851585111
100.0000
ltrigg-rtg1SNPtvmap_l250_m2_e0homalt
99.6791
99.4664
99.8928
87.0650
932593211
100.0000
jmaeng-gatkINDEL*map_l150_m0_e0homalt
98.1707
98.1707
98.1707
91.1923
161316133
100.0000
jmaeng-gatkINDEL*map_l250_m0_e0homalt
96.0000
96.0000
96.0000
97.5248
2412411
100.0000
jmaeng-gatkINDEL*map_l250_m1_e0homalt
97.2222
96.3303
98.1308
95.0256
105410522
100.0000
jmaeng-gatkINDEL*map_l250_m2_e0homalt
97.3684
96.5217
98.2301
95.4673
111411122
100.0000
jmaeng-gatkINDEL*map_l250_m2_e1homalt
97.3913
96.5517
98.2456
95.5277
112411222
100.0000