PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2201-2250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | homalt | 99.6317 | 99.5217 | 99.7419 | 87.3537 | 2705 | 13 | 2705 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | segdup | homalt | 99.7351 | 99.9348 | 99.5361 | 88.6997 | 10736 | 7 | 10729 | 50 | 50 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | * | hetalt | 99.0637 | 99.8282 | 98.3108 | 41.4441 | 581 | 1 | 582 | 10 | 10 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | HG002complexvar | hetalt | 99.0419 | 99.5169 | 98.5714 | 36.3636 | 206 | 1 | 207 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0944 | 98.2843 | 99.9179 | 60.1440 | 1203 | 21 | 1217 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.8571 | 100.0000 | 86.6667 | 87.0690 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.8571 | 100.0000 | 86.6667 | 87.0690 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7763 | 99.6011 | 99.9520 | 41.2692 | 6243 | 25 | 6253 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7289 | 99.5326 | 99.9260 | 41.7636 | 4046 | 19 | 4052 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.3022 | 68.5714 | 96.8750 | 88.4058 | 24 | 11 | 31 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9300 | 99.9299 | 99.9300 | 24.2713 | 1426 | 1 | 1428 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m0_e0 | homalt | 99.7102 | 99.5884 | 99.8324 | 61.6545 | 7742 | 32 | 7742 | 13 | 13 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m1_e0 | homalt | 99.8050 | 99.7216 | 99.8885 | 59.4316 | 17910 | 50 | 17910 | 20 | 20 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | homalt | 99.8005 | 99.7214 | 99.8796 | 61.9278 | 18258 | 51 | 18258 | 22 | 22 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e1 | homalt | 99.8025 | 99.7242 | 99.8809 | 61.9106 | 18443 | 51 | 18443 | 22 | 22 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | homalt | 99.6656 | 99.5324 | 99.7991 | 68.6301 | 4470 | 21 | 4470 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m1_e0 | homalt | 99.7461 | 99.6016 | 99.8910 | 65.4505 | 11001 | 44 | 11001 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | homalt | 99.7531 | 99.6126 | 99.8940 | 67.9785 | 11314 | 44 | 11314 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | homalt | 99.7553 | 99.6160 | 99.8950 | 68.0185 | 11414 | 44 | 11415 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m0_e0 | homalt | 99.5282 | 99.3481 | 99.7091 | 74.5205 | 2743 | 18 | 2742 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m1_e0 | homalt | 99.6993 | 99.5496 | 99.8494 | 70.3647 | 7294 | 33 | 7295 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | homalt | 99.7107 | 99.5667 | 99.8552 | 72.6188 | 7583 | 33 | 7584 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | homalt | 99.7136 | 99.5710 | 99.8566 | 72.6687 | 7660 | 33 | 7662 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m0_e0 | homalt | 99.4273 | 99.5413 | 99.3135 | 91.3104 | 434 | 2 | 434 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | homalt | 99.6262 | 99.5022 | 99.7505 | 86.3540 | 1599 | 8 | 1599 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | homalt | 99.6280 | 99.5426 | 99.7136 | 87.3322 | 1741 | 8 | 1741 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e1 | homalt | 99.6047 | 99.5485 | 99.6610 | 87.3743 | 1764 | 8 | 1764 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_siren | hetalt | 98.2759 | 100.0000 | 96.6102 | 66.2857 | 57 | 0 | 57 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | segdup | homalt | 99.7604 | 99.9334 | 99.5880 | 88.0751 | 7500 | 5 | 7494 | 31 | 31 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | * | hetalt | 99.2007 | 99.6556 | 98.7500 | 40.5405 | 868 | 3 | 869 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | HG002complexvar | hetalt | 98.8749 | 99.0323 | 98.7179 | 36.8421 | 307 | 3 | 308 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8472 | 99.7712 | 99.9233 | 31.1675 | 1308 | 3 | 1302 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | homalt | 99.7971 | 99.6398 | 99.9548 | 70.1295 | 2213 | 8 | 2213 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | homalt | 99.8377 | 99.7440 | 99.9316 | 65.7995 | 5845 | 15 | 5846 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | homalt | 99.8420 | 99.7507 | 99.9334 | 68.3459 | 6002 | 15 | 6003 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | homalt | 99.8435 | 99.7530 | 99.9341 | 68.3791 | 6059 | 15 | 6065 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | homalt | 99.6981 | 99.4729 | 99.9244 | 76.2016 | 1321 | 7 | 1321 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | homalt | 99.8478 | 99.7466 | 99.9492 | 70.2200 | 3936 | 10 | 3937 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | homalt | 99.8529 | 99.7551 | 99.9509 | 72.6094 | 4073 | 10 | 4074 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | homalt | 99.8426 | 99.7339 | 99.9516 | 72.6103 | 4123 | 11 | 4127 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | homalt | 99.6487 | 99.4159 | 99.8826 | 86.0259 | 851 | 5 | 851 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | homalt | 99.6791 | 99.4664 | 99.8928 | 87.0650 | 932 | 5 | 932 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.1707 | 98.1707 | 98.1707 | 91.1923 | 161 | 3 | 161 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.5248 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m1_e0 | homalt | 97.2222 | 96.3303 | 98.1308 | 95.0256 | 105 | 4 | 105 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e0 | homalt | 97.3684 | 96.5217 | 98.2301 | 95.4673 | 111 | 4 | 111 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.3913 | 96.5517 | 98.2456 | 95.5277 | 112 | 4 | 112 | 2 | 2 | 100.0000 | |