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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
22301-22350 / 86044 show all
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
87.1392
90.6725
83.8710
73.1533
8368688417086
50.5882
gduggal-snapplatSNP*map_l100_m1_e0*
95.4122
93.9174
96.9553
75.8528
6799944046801921361080
50.5618
ciseli-customINDEL*segduphet
88.2244
88.4038
88.0457
95.3251
1296170131117890
50.5618
qzeng-customINDELD16_PLUSHG002compoundhethomalt
6.1856
100.0000
3.1915
36.2712
80618292
50.5495
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
80.1634
98.6945
67.4912
84.0788
378538218493
50.5435
rpoplin-dv42SNP*map_l100_m2_e1het
99.2783
99.1577
99.3992
66.0072
4650339546491281142
50.5338
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50*
96.4963
97.0192
95.9791
41.7450
1764154217783745376
50.4698
jpowers-varprowlSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.4919
99.8244
97.1944
47.1301
39807398411558
50.4348
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
79.8732
68.2411
96.2857
80.2619
30341412303311759
50.4274
ciseli-customINDEL*map_l150_m0_e0*
63.1351
56.8093
71.0462
94.9719
29222229211960
50.4202
gduggal-snapplatSNP*map_l100_m2_e1*
95.5097
94.0511
97.0142
77.3448
7029144467031221641091
50.4159
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
94.1491
90.4125
98.2078
67.8829
13174139713261242122
50.4132
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.1491
90.4125
98.2078
67.8829
13174139713261242122
50.4132
anovak-vgINDEL*map_l250_m2_e1*
67.7462
69.9700
65.6593
96.4861
23310023912563
50.4000
jpowers-varprowlSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.3080
99.3771
99.2391
58.1058
170701071708513166
50.3817
gduggal-snapplatSNPtvmap_l150_m0_e0het
88.2289
86.2117
90.3428
90.9621
24513922451262132
50.3817
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
93.5407
95.2841
91.8599
48.3177
90724499073804405
50.3731
gduggal-snapplatSNP*map_l100_m2_e0*
95.4808
94.0120
96.9962
77.3300
6953544296955521541085
50.3714
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.1911
97.7409
98.6454
80.0759
105572441055914573
50.3448
ckim-dragenSNP*HG002complexvar*
99.9301
99.9223
99.9379
19.4552
753795586754278469236
50.3198
rpoplin-dv42SNP*map_sirenhet
99.5263
99.4010
99.6518
54.9841
9044654590433316159
50.3165
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
77.5469
65.0258
96.0400
78.6649
4249522856424901752879
50.1712
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.5469
65.0258
96.0400
78.6649
4249522856424901752879
50.1712
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
82.7602
77.8800
88.2929
83.1252
21166012255299150
50.1672
gduggal-snapplatSNP*map_l100_m1_e0het
95.1709
95.0043
95.3380
79.9679
4309322664312921091058
50.1660
ckim-dragenSNPtiHG002complexvar*
99.9317
99.9245
99.9389
17.8695
508052384508287311156
50.1608
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
82.8282
98.9485
71.2246
86.5324
94110948383192
50.1305
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
80.3562
86.2869
75.1884
83.1152
12271951397461231
50.1085
ciseli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
39.9506
39.3669
40.5518
64.0084
485747485711356
50.0703
ciseli-customINDELD16_PLUSfunc_cds*
52.6316
41.6667
71.4286
46.1538
57521
50.0000
ciseli-customINDELD16_PLUSmap_l100_m2_e0het
54.2636
41.6667
77.7778
88.6076
20282163
50.0000
ciseli-customINDELD16_PLUSmap_l100_m2_e1het
55.8807
43.1373
79.3103
88.0165
22292363
50.0000
ciseli-customINDELD16_PLUSsegduphet
79.5789
72.9730
87.5000
90.3614
27102842
50.0000
ciseli-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
99.2218
20221
50.0000
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
73.6842
70.0000
77.7778
99.4813
73721
50.0000
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
97.0149
00021
50.0000
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
27.6134
19.4444
47.6190
91.1579
2187202211
50.0000
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
18.7500
11.1111
60.0000
95.6522
324321
50.0000
ciseli-customINDELI16_PLUSmap_l100_m1_e0homalt
25.0000
20.0000
33.3333
90.3226
14121
50.0000
ciseli-customINDELI16_PLUSmap_l100_m2_e0homalt
25.0000
20.0000
33.3333
91.4286
14121
50.0000
ciseli-customINDELI16_PLUSmap_l100_m2_e1homalt
25.0000
20.0000
33.3333
91.8919
14121
50.0000
ciseli-customINDELI1_5lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
90.9091
00021
50.0000
ciseli-customINDELI1_5map_l125_m0_e0homalt
41.9948
28.0702
83.3333
91.1330
32823063
50.0000
ciseli-customINDELI1_5map_l250_m0_e0*
34.1463
29.1667
41.1765
98.8591
7177105
50.0000
ciseli-customINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200het
48.9796
34.2857
85.7143
88.7097
12231221
50.0000
ciseli-customINDELI6_15map_l125_m1_e0homalt
30.0000
20.0000
60.0000
91.3793
312321
50.0000
ciseli-customINDELI6_15map_l125_m2_e0homalt
30.0000
20.0000
60.0000
92.7536
312321
50.0000
ciseli-customINDELI6_15map_l125_m2_e1homalt
30.0000
20.0000
60.0000
92.8571
312321
50.0000
ciseli-customINDELI6_15map_l150_m2_e1*
18.7500
11.1111
60.0000
97.2973
324321
50.0000
ciseli-customINDELI6_15map_l150_m2_e1homalt
0.0000
0.0000
96.6667
08021
50.0000