PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22201-22250 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.7010 | 99.6632 | 99.7389 | 50.8366 | 11835 | 40 | 11840 | 31 | 16 | 51.6129 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | * | 97.7704 | 97.8860 | 97.6551 | 86.2578 | 1065 | 23 | 1291 | 31 | 16 | 51.6129 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | * | 97.8366 | 97.9003 | 97.7730 | 86.6718 | 1119 | 24 | 1361 | 31 | 16 | 51.6129 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e1 | homalt | 99.8719 | 99.8597 | 99.8841 | 65.3160 | 27757 | 39 | 26718 | 31 | 16 | 51.6129 | |
| jli-custom | SNP | ti | map_l250_m1_e0 | het | 97.6625 | 96.4286 | 98.9284 | 86.8086 | 2862 | 106 | 2862 | 31 | 16 | 51.6129 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.9039 | 98.4555 | 99.3564 | 61.2968 | 4781 | 75 | 4786 | 31 | 16 | 51.6129 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | het | 80.0048 | 71.5543 | 90.7186 | 97.0277 | 244 | 97 | 303 | 31 | 16 | 51.6129 | |
| qzeng-custom | INDEL | * | map_l250_m2_e1 | het | 76.6254 | 69.1943 | 85.8447 | 98.2768 | 146 | 65 | 188 | 31 | 16 | 51.6129 | |
| anovak-vg | INDEL | I6_15 | * | het | 35.7228 | 26.3530 | 55.4313 | 44.2246 | 2644 | 7389 | 4312 | 3467 | 1789 | 51.6008 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.0047 | 86.8966 | 81.2992 | 66.0428 | 378 | 57 | 413 | 95 | 49 | 51.5789 | |
| rpoplin-dv42 | INDEL | * | map_siren | * | 98.4035 | 98.0972 | 98.7117 | 97.1910 | 7269 | 141 | 7279 | 95 | 49 | 51.5789 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 71.7619 | 59.4118 | 90.5941 | 73.3930 | 909 | 621 | 915 | 95 | 49 | 51.5789 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 71.7619 | 59.4118 | 90.5941 | 73.3930 | 909 | 621 | 915 | 95 | 49 | 51.5789 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.4857 | 98.0964 | 96.8826 | 61.5590 | 15460 | 300 | 16751 | 539 | 278 | 51.5770 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.9639 | 78.4943 | 97.4823 | 82.5580 | 2471 | 677 | 2478 | 64 | 33 | 51.5625 | |
| asubramanian-gatk | INDEL | I1_5 | * | het | 99.1412 | 98.6564 | 99.6308 | 61.4273 | 77979 | 1062 | 77980 | 289 | 149 | 51.5571 | |
| gduggal-snapfb | SNP | ti | map_l150_m1_e0 | het | 95.7023 | 96.5643 | 94.8555 | 74.3999 | 11945 | 425 | 11948 | 648 | 334 | 51.5432 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | het | 65.0768 | 88.4615 | 51.4706 | 92.9130 | 69 | 9 | 70 | 66 | 34 | 51.5152 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e0 | het | 94.1319 | 95.3903 | 92.9063 | 87.5637 | 3104 | 150 | 3104 | 237 | 122 | 51.4768 | |
| gduggal-bwavard | SNP | tv | HG002complexvar | homalt | 98.3914 | 96.9047 | 99.9244 | 20.9085 | 92167 | 2944 | 89912 | 68 | 35 | 51.4706 | |
| dgrover-gatk | SNP | * | HG002complexvar | * | 99.9517 | 99.9260 | 99.9773 | 19.0606 | 753823 | 558 | 753668 | 171 | 88 | 51.4620 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e1 | het | 93.3381 | 93.1962 | 93.4803 | 85.9836 | 9835 | 718 | 9836 | 686 | 353 | 51.4577 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.4179 | 97.9487 | 96.8928 | 71.1401 | 30130 | 631 | 30123 | 966 | 497 | 51.4493 | |
| eyeh-varpipe | INDEL | * | map_l150_m1_e0 | het | 96.7203 | 96.6082 | 96.8326 | 87.6550 | 826 | 29 | 1070 | 35 | 18 | 51.4286 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | het | 96.7930 | 96.5784 | 97.0085 | 88.1973 | 875 | 31 | 1135 | 35 | 18 | 51.4286 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e1 | het | 96.7897 | 96.5368 | 97.0439 | 88.2865 | 892 | 32 | 1149 | 35 | 18 | 51.4286 | |
| jli-custom | SNP | ti | map_l250_m2_e1 | * | 98.3796 | 97.4783 | 99.2976 | 86.9545 | 4948 | 128 | 4948 | 35 | 18 | 51.4286 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.0366 | 91.2990 | 99.0933 | 69.4457 | 15498 | 1477 | 15300 | 140 | 72 | 51.4286 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.9064 | 83.4507 | 95.1253 | 86.7650 | 711 | 141 | 683 | 35 | 18 | 51.4286 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.0366 | 91.2990 | 99.0933 | 69.4457 | 15498 | 1477 | 15300 | 140 | 72 | 51.4286 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3473 | 97.2572 | 99.4621 | 37.7380 | 6560 | 185 | 6472 | 35 | 18 | 51.4286 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | het | 93.1767 | 92.9883 | 93.3657 | 84.9692 | 9416 | 710 | 9415 | 669 | 344 | 51.4200 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | * | 96.3262 | 95.9877 | 96.6670 | 77.7511 | 19689 | 823 | 19693 | 679 | 349 | 51.3991 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.5108 | 70.3401 | 63.0769 | 51.2012 | 517 | 218 | 615 | 360 | 185 | 51.3889 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | * | 98.1855 | 96.8824 | 99.5241 | 87.6224 | 7738 | 249 | 7738 | 37 | 19 | 51.3514 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4267 | 96.6141 | 98.2531 | 76.5682 | 2083 | 73 | 2081 | 37 | 19 | 51.3514 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m1_e0 | het | 93.7564 | 95.0207 | 92.5253 | 90.0901 | 458 | 24 | 458 | 37 | 19 | 51.3514 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e1 | * | 96.3445 | 96.0141 | 96.6772 | 77.8313 | 19897 | 826 | 19901 | 684 | 351 | 51.3158 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.2950 | 93.8423 | 98.8793 | 50.2372 | 7879 | 517 | 13588 | 154 | 79 | 51.2987 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 67.0927 | 72.4138 | 62.5000 | 88.2086 | 63 | 24 | 65 | 39 | 20 | 51.2821 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 72.5832 | 98.0769 | 57.6087 | 86.0395 | 51 | 1 | 53 | 39 | 20 | 51.2821 | |
| egarrison-hhga | INDEL | I1_5 | HG002complexvar | * | 98.9362 | 98.5823 | 99.2928 | 54.0549 | 32890 | 473 | 32852 | 234 | 120 | 51.2821 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e0 | het | 93.9597 | 95.3307 | 92.6276 | 90.5316 | 490 | 24 | 490 | 39 | 20 | 51.2821 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | * | 99.3576 | 98.8807 | 99.8392 | 63.3838 | 48413 | 548 | 48415 | 78 | 40 | 51.2821 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8701 | 98.1095 | 99.6426 | 59.5927 | 10898 | 210 | 10873 | 39 | 20 | 51.2821 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6681 | 97.1707 | 98.1707 | 76.7832 | 2095 | 61 | 2093 | 39 | 20 | 51.2821 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | het | 89.8971 | 82.6214 | 98.5779 | 61.4508 | 38181 | 8031 | 38126 | 550 | 282 | 51.2727 | |
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | * | 99.0308 | 98.3192 | 99.7529 | 65.5554 | 32289 | 552 | 32290 | 80 | 41 | 51.2500 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.5233 | 95.1335 | 95.9163 | 58.0490 | 2815 | 144 | 2842 | 121 | 62 | 51.2397 | |
| anovak-vg | INDEL | * | map_l250_m2_e0 | * | 67.7533 | 69.7885 | 65.8333 | 96.4399 | 231 | 100 | 237 | 123 | 63 | 51.2195 | |