PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22051-22100 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | tv | map_l150_m2_e1 | * | 92.0738 | 89.4279 | 94.8810 | 86.0143 | 10286 | 1216 | 10287 | 555 | 293 | 52.7928 | |
| gduggal-snapplat | SNP | tv | map_l125_m0_e0 | * | 89.9339 | 86.5631 | 93.5778 | 86.2991 | 5740 | 891 | 5741 | 394 | 208 | 52.7919 | |
| anovak-vg | INDEL | * | func_cds | het | 74.7761 | 69.6262 | 80.7487 | 43.8438 | 149 | 65 | 151 | 36 | 19 | 52.7778 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6716 | 99.6463 | 99.6968 | 50.6032 | 11833 | 42 | 11838 | 36 | 19 | 52.7778 | |
| astatham-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4718 | 99.0131 | 99.9347 | 60.3688 | 55082 | 549 | 55072 | 36 | 19 | 52.7778 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 89.7351 | 86.0317 | 93.7716 | 60.6535 | 542 | 88 | 542 | 36 | 19 | 52.7778 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7538 | 99.9318 | 97.6032 | 55.4303 | 1465 | 1 | 1466 | 36 | 19 | 52.7778 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | * | 98.1811 | 96.8675 | 99.5309 | 87.5400 | 7638 | 247 | 7638 | 36 | 19 | 52.7778 | |
| ndellapenna-hhga | SNP | ti | map_l100_m0_e0 | het | 98.6920 | 97.6686 | 99.7371 | 67.9732 | 13657 | 326 | 13658 | 36 | 19 | 52.7778 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 85.4215 | 78.1353 | 94.2062 | 35.5484 | 6386 | 1787 | 2065 | 127 | 67 | 52.7559 | |
| gduggal-snapplat | SNP | tv | map_l150_m2_e0 | het | 91.9870 | 91.5747 | 92.4029 | 88.3430 | 6641 | 611 | 6641 | 546 | 288 | 52.7473 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.6825 | 16.8919 | 26.6667 | 71.6981 | 25 | 123 | 20 | 55 | 29 | 52.7273 | |
| gduggal-snapfb | INDEL | I1_5 | * | hetalt | 80.2098 | 77.5793 | 83.0249 | 77.6167 | 8685 | 2510 | 4128 | 844 | 445 | 52.7251 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | * | 88.7392 | 83.8658 | 94.2139 | 93.6830 | 4200 | 808 | 4201 | 258 | 136 | 52.7132 | |
| anovak-vg | INDEL | * | map_l150_m1_e0 | * | 72.5622 | 74.5142 | 70.7099 | 89.9578 | 997 | 341 | 1026 | 425 | 224 | 52.7059 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4287 | 99.1605 | 99.6983 | 57.8100 | 55164 | 467 | 55180 | 167 | 88 | 52.6946 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | * | 99.1686 | 98.5527 | 99.7922 | 67.5463 | 44671 | 656 | 44671 | 93 | 49 | 52.6882 | |
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | het | 98.7411 | 98.8195 | 98.6628 | 73.7814 | 6864 | 82 | 6862 | 93 | 49 | 52.6882 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | het | 98.7872 | 98.8555 | 98.7190 | 75.1931 | 7169 | 83 | 7167 | 93 | 49 | 52.6882 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | het | 98.8030 | 98.8704 | 98.7357 | 75.2106 | 7265 | 83 | 7263 | 93 | 49 | 52.6882 | |
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | het | 95.0321 | 95.8369 | 94.2408 | 72.9383 | 7919 | 344 | 7920 | 484 | 255 | 52.6860 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | het | 93.8477 | 95.0809 | 92.6461 | 86.7956 | 2822 | 146 | 2822 | 224 | 118 | 52.6786 | |
| jlack-gatk | INDEL | D6_15 | * | het | 96.7124 | 98.9476 | 94.5760 | 63.3561 | 11470 | 122 | 11421 | 655 | 345 | 52.6718 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 86.8622 | 82.8909 | 91.2332 | 40.8368 | 3154 | 651 | 1561 | 150 | 79 | 52.6667 | |
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.5573 | 99.8218 | 95.3932 | 57.7564 | 10084 | 18 | 10105 | 488 | 257 | 52.6639 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3100 | 99.6183 | 93.2143 | 76.1499 | 522 | 2 | 522 | 38 | 20 | 52.6316 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.3372 | 96.2662 | 98.4323 | 54.8939 | 1186 | 46 | 1193 | 19 | 10 | 52.6316 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2477 | 99.2381 | 99.2572 | 75.1119 | 5080 | 39 | 5078 | 38 | 20 | 52.6316 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | * | 64.4116 | 67.9487 | 61.2245 | 98.1965 | 53 | 25 | 60 | 38 | 20 | 52.6316 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 28.0467 | 29.2683 | 26.9231 | 53.5714 | 12 | 29 | 14 | 38 | 20 | 52.6316 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8422 | 97.9805 | 99.7191 | 81.0931 | 6744 | 139 | 6744 | 19 | 10 | 52.6316 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0343 | 98.3940 | 99.6831 | 76.6868 | 6004 | 98 | 5976 | 19 | 10 | 52.6316 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | * | 97.9240 | 96.5649 | 99.3219 | 86.9151 | 2783 | 99 | 2783 | 19 | 10 | 52.6316 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | * | 97.9485 | 96.6049 | 99.3300 | 87.0027 | 2817 | 99 | 2817 | 19 | 10 | 52.6316 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.3649 | 82.7068 | 84.0336 | 84.5855 | 110 | 23 | 100 | 19 | 10 | 52.6316 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.7132 | 98.1565 | 99.2762 | 66.6200 | 2609 | 49 | 2606 | 19 | 10 | 52.6316 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e1 | homalt | 95.5941 | 92.2001 | 99.2475 | 92.8509 | 2506 | 212 | 2506 | 19 | 10 | 52.6316 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | homalt | 98.5323 | 98.5726 | 98.4921 | 84.5872 | 1243 | 18 | 1241 | 19 | 10 | 52.6316 | |
| ckim-dragen | INDEL | * | map_l100_m2_e1 | homalt | 98.5552 | 98.5948 | 98.5156 | 84.6468 | 1263 | 18 | 1261 | 19 | 10 | 52.6316 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.3777 | 93.7799 | 97.0308 | 84.5325 | 2548 | 169 | 2549 | 78 | 41 | 52.5641 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 92.0742 | 88.4708 | 95.9835 | 76.8106 | 3668 | 478 | 3728 | 156 | 82 | 52.5641 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 68.7985 | 52.6643 | 99.1844 | 57.0543 | 9567 | 8599 | 9486 | 78 | 41 | 52.5641 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 68.7985 | 52.6643 | 99.1844 | 57.0543 | 9567 | 8599 | 9486 | 78 | 41 | 52.5641 | |
| hfeng-pmm1 | INDEL | I1_5 | * | het | 99.6416 | 99.5559 | 99.7275 | 59.6258 | 78690 | 351 | 78673 | 215 | 113 | 52.5581 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 88.6540 | 89.8499 | 87.4895 | 45.7726 | 8498 | 960 | 9343 | 1336 | 702 | 52.5449 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 83.2650 | 74.7927 | 93.9018 | 56.7791 | 1804 | 608 | 1817 | 118 | 62 | 52.5424 | |
| egarrison-hhga | SNP | * | HG002compoundhet | het | 98.5499 | 97.5455 | 99.5752 | 43.4625 | 13830 | 348 | 13830 | 59 | 31 | 52.5424 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.1230 | 91.0747 | 83.5000 | 78.7460 | 500 | 49 | 501 | 99 | 52 | 52.5253 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 91.6601 | 95.7237 | 87.9276 | 63.3075 | 873 | 39 | 874 | 120 | 63 | 52.5000 | |
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | * | 88.1520 | 82.9439 | 94.0579 | 93.4361 | 3798 | 781 | 3799 | 240 | 126 | 52.5000 | |