PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2151-2200 / 86044 show all
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
85.6369
75.2427
99.3631
51.2422
1555115611
100.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
86.0739
75.9777
99.2647
40.3509
1364313511
100.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.9633
96.8354
99.1176
83.2016
3061033733
100.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.7133
97.7896
99.6546
56.8394
110625115444
100.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.9485
97.2350
98.6726
55.9454
211622333
100.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.2060
99.0415
99.3711
52.8190
310331622
100.0000
ltrigg-rtg1INDELI1_5map_l100_m0_e0hetalt
95.2381
100.0000
90.9091
95.5645
901011
100.0000
ltrigg-rtg1INDELI1_5map_l100_m1_e0hetalt
92.9362
88.6364
97.6744
92.8808
3954211
100.0000
ltrigg-rtg1INDELI1_5map_l100_m2_e0hetalt
92.9362
88.6364
97.6744
93.3846
3954211
100.0000
ltrigg-rtg1INDELI1_5map_l100_m2_e1hetalt
93.0988
88.8889
97.7273
93.3333
4054311
100.0000
ltrigg-rtg1INDELI1_5map_l150_m0_e0homalt
99.2366
100.0000
98.4848
88.7564
6706511
100.0000
ltrigg-rtg1INDELI1_5map_sirenhetalt
97.2768
95.5357
99.0826
91.7674
107510811
100.0000
ltrigg-rtg1INDELI1_5segduphomalt
99.6825
100.0000
99.3671
92.1924
473047133
100.0000
ltrigg-rtg1INDELI6_15HG002complexvarhetalt
95.3064
91.3328
99.6416
58.0293
1117106111244
100.0000
ltrigg-rtg1INDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.1777
91.1321
99.5992
56.5331
4834749722
100.0000
ltrigg-rtg1INDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.7552
96.6102
94.9153
69.5876
5725633
100.0000
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.2267
97.4545
99.0111
63.3439
8042180188
100.0000
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
95.4063
91.4601
99.7085
54.4489
3323134211
100.0000
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
89.5349
91.6667
87.5000
71.7647
2222133
100.0000
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.1429
96.6825
97.6077
63.0742
204720455
100.0000
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.1262
97.3404
98.9247
61.8070
183518422
100.0000
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0671
97.7492
98.3871
63.8273
304730555
100.0000
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.2267
97.4545
99.0111
63.3439
8042180188
100.0000
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3452
98.6928
98.0000
69.6970
151214733
100.0000
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_diTR_51to200*
89.2857
81.5217
98.6842
59.5745
75177511
100.0000
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
90.9091
84.3373
98.5915
47.0149
70137011
100.0000
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
97.3706
95.4839
99.3333
79.5640
148714911
100.0000
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.9796
97.9592
98.0000
77.7778
4814911
100.0000
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.2881
95.0078
99.6805
52.4677
6093262422
100.0000
ltrigg-rtg1INDELI6_15map_sirenhomalt
96.6288
96.6667
96.5909
78.8969
8738533
100.0000
ltrigg-rtg1INDELI6_15segdup*
98.2573
97.1429
99.3976
90.0360
170516511
100.0000
ltrigg-rtg1INDELI6_15segduphet
98.1509
97.5904
98.7179
89.4595
8127711
100.0000
ltrigg-rtg1SNP**hetalt
99.2007
99.6556
98.7500
40.5405
86838691111
100.0000
ltrigg-rtg1SNP*HG002complexvarhetalt
98.8749
99.0323
98.7179
36.8421
307330844
100.0000
ltrigg-rtg1SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.1355
98.3410
99.9430
61.2925
171929175411
100.0000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
94.1176
100.0000
88.8889
88.6792
1501622
100.0000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.1176
100.0000
88.8889
88.6792
1501622
100.0000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
83.5267
73.1707
97.2973
89.3372
30113611
100.0000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8903
99.8539
99.9268
27.7249
27344273022
100.0000
ltrigg-rtg1SNP*map_l125_m0_e0homalt
99.7091
99.5679
99.8506
69.2643
66832966831010
100.0000
ltrigg-rtg1SNP*map_l125_m1_e0homalt
99.7779
99.6510
99.9051
65.6341
1684659168471616
100.0000
ltrigg-rtg1SNP*map_l125_m2_e0homalt
99.7839
99.6604
99.9077
68.1589
1731659173171616
100.0000
ltrigg-rtg1SNP*map_l125_m2_e1homalt
99.7859
99.6635
99.9086
68.1960
1747359174801616
100.0000
ltrigg-rtg1SNP*map_l150_m0_e0homalt
99.5834
99.3886
99.7790
75.2221
406425406399
100.0000
ltrigg-rtg1SNP*map_l150_m1_e0homalt
99.7513
99.6186
99.8844
70.3814
1123043112321313
100.0000
ltrigg-rtg1SNP*map_l150_m2_e0homalt
99.7604
99.6324
99.8886
72.6706
1165643116581313
100.0000
ltrigg-rtg1SNP*map_l150_m2_e1homalt
99.7587
99.6280
99.8898
72.7027
1178344117891313
100.0000
ltrigg-rtg1SNP*map_l250_m0_e0homalt
99.4431
99.3641
99.5223
91.8579
625462533
100.0000
ltrigg-rtg1SNP*map_l250_m1_e0homalt
99.6340
99.4722
99.7963
86.3079
245013245055
100.0000
ltrigg-rtg1SNP*map_l250_m2_e0homalt
99.6459
99.5160
99.7760
87.2925
267313267366
100.0000