PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21851-21900 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I1_5 | HG002complexvar | het | 94.3344 | 93.1277 | 95.5727 | 50.4026 | 16939 | 1250 | 16838 | 780 | 423 | 54.2308 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 72.5476 | 77.2827 | 68.3592 | 65.9014 | 13771 | 4048 | 14661 | 6786 | 3680 | 54.2293 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 49.6345 | 46.9154 | 52.6882 | 51.2725 | 327 | 370 | 343 | 308 | 167 | 54.2208 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.9827 | 12.2677 | 53.8462 | 92.1805 | 33 | 236 | 28 | 24 | 13 | 54.1667 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.2397 | 84.0426 | 95.1220 | 53.9757 | 474 | 90 | 468 | 24 | 13 | 54.1667 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e0 | het | 94.8187 | 95.8115 | 93.8462 | 88.6430 | 732 | 32 | 732 | 48 | 26 | 54.1667 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.7405 | 88.7846 | 97.0653 | 58.2458 | 8605 | 1087 | 8798 | 266 | 144 | 54.1353 | |
| ltrigg-rtg2 | INDEL | * | HG002compoundhet | het | 95.9824 | 95.5300 | 96.4390 | 67.6682 | 3911 | 183 | 3954 | 146 | 79 | 54.1096 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 73.9804 | 73.1132 | 74.8684 | 46.1375 | 2015 | 741 | 2276 | 764 | 413 | 54.0576 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8091 | 97.3562 | 98.2662 | 76.6111 | 2099 | 57 | 2097 | 37 | 20 | 54.0541 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.7316 | 95.9538 | 91.6100 | 65.6542 | 332 | 14 | 404 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 38.3333 | 68.9119 | 0 | 47 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 38.3333 | 68.7500 | 0 | 15 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e1 | het | 94.1854 | 93.9645 | 94.4074 | 84.4472 | 17935 | 1152 | 17961 | 1064 | 575 | 54.0414 | |
| ckim-isaac | INDEL | I1_5 | HG002complexvar | * | 93.9569 | 91.3347 | 96.7341 | 48.5479 | 30472 | 2891 | 30419 | 1027 | 555 | 54.0409 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 87.5291 | 86.9258 | 88.1409 | 52.6080 | 19341 | 2909 | 20149 | 2711 | 1465 | 54.0391 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e0 | het | 94.1306 | 93.9023 | 94.3600 | 84.4255 | 17725 | 1151 | 17751 | 1061 | 573 | 54.0057 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 79.7708 | 76.3365 | 83.5286 | 61.7313 | 871 | 270 | 2282 | 450 | 243 | 54.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | het | 94.7368 | 95.8442 | 93.6548 | 88.7251 | 738 | 32 | 738 | 50 | 27 | 54.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 80.8254 | 69.6160 | 96.3373 | 74.6865 | 21865 | 9543 | 21857 | 831 | 448 | 53.9110 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 80.8254 | 69.6160 | 96.3373 | 74.6865 | 21865 | 9543 | 21857 | 831 | 448 | 53.9110 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 28.6628 | 18.2874 | 66.2500 | 62.2444 | 504 | 2252 | 477 | 243 | 131 | 53.9095 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | het | 92.3125 | 91.6921 | 92.9413 | 85.1008 | 6622 | 600 | 6623 | 503 | 271 | 53.8767 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 93.6443 | 95.4077 | 91.9449 | 64.3247 | 4633 | 223 | 4874 | 427 | 230 | 53.8642 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.8939 | 98.1187 | 99.6815 | 82.4367 | 4068 | 78 | 4068 | 13 | 7 | 53.8462 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.3450 | 94.8485 | 95.8466 | 76.3952 | 313 | 17 | 300 | 13 | 7 | 53.8462 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1239 | 97.7673 | 98.4831 | 88.4750 | 832 | 19 | 844 | 13 | 7 | 53.8462 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2266 | 98.4848 | 96.0000 | 75.7282 | 325 | 5 | 312 | 13 | 7 | 53.8462 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e1 | homalt | 97.8156 | 95.9417 | 99.7641 | 75.2443 | 10993 | 465 | 10994 | 26 | 14 | 53.8462 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | hetalt | 34.1880 | 23.8095 | 60.6061 | 98.0287 | 20 | 64 | 20 | 13 | 7 | 53.8462 | |
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | homalt | 97.7417 | 95.8081 | 99.7549 | 73.6978 | 10582 | 463 | 10583 | 26 | 14 | 53.8462 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e0 | homalt | 97.7959 | 95.9060 | 99.7619 | 75.2353 | 10893 | 465 | 10894 | 26 | 14 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | * | 57.8534 | 59.0909 | 56.6667 | 94.8980 | 13 | 9 | 17 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | het | 60.0858 | 71.4286 | 51.8519 | 94.9343 | 10 | 4 | 14 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | * | 58.5732 | 59.0909 | 58.0645 | 94.8845 | 13 | 9 | 18 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | het | 61.2245 | 71.4286 | 53.5714 | 94.9183 | 10 | 4 | 15 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | homalt | 99.4956 | 99.1127 | 99.8814 | 67.6839 | 10947 | 98 | 10947 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | homalt | 99.5006 | 99.1196 | 99.8847 | 69.9640 | 11258 | 100 | 11258 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | homalt | 99.5050 | 99.1272 | 99.8857 | 70.0171 | 11358 | 100 | 11358 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | homalt | 99.6065 | 99.3586 | 99.8555 | 63.7543 | 8985 | 58 | 8985 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | homalt | 99.6083 | 99.3597 | 99.8582 | 65.9435 | 9155 | 59 | 9155 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | homalt | 99.6066 | 99.3550 | 99.8595 | 65.9755 | 9242 | 60 | 9242 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 73.1959 | 94.5105 | 0 | 0 | 71 | 26 | 14 | 53.8462 | |
| cchapple-custom | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 65.7895 | 94.4888 | 0 | 0 | 50 | 26 | 14 | 53.8462 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 83.6445 | 85.4167 | 81.9444 | 92.5620 | 41 | 7 | 59 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.6663 | 86.2745 | 83.1169 | 92.2457 | 44 | 7 | 64 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | I16_PLUS | HG002complexvar | het | 97.6379 | 96.5414 | 98.7595 | 67.9804 | 642 | 23 | 1035 | 13 | 7 | 53.8462 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 23.5294 | 100.0000 | 13.3333 | 89.6552 | 1 | 0 | 2 | 13 | 7 | 53.8462 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.2012 | 96.5257 | 97.8862 | 78.6532 | 639 | 23 | 602 | 13 | 7 | 53.8462 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2266 | 98.4848 | 96.0000 | 75.6006 | 325 | 5 | 312 | 13 | 7 | 53.8462 | |