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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
21751-21800 / 86044 show all
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.9231
95.7613
94.0995
63.0798
17396770173991091598
54.8121
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.9231
95.7613
94.0995
63.0798
17396770173991091598
54.8121
ndellapenna-hhgaSNPtimap_l150_m2_e0*
99.0695
98.3571
99.7923
74.0705
20175337201754223
54.7619
astatham-gatkSNPtimap_siren*
94.0656
88.8705
99.9059
56.9785
8918611169891718446
54.7619
astatham-gatkSNPtimap_l125_m1_e0*
91.1797
83.9407
99.7852
74.5658
246244711246205329
54.7170
astatham-gatkSNPtimap_l125_m2_e0*
91.2512
84.0571
99.7920
76.0047
254344824254305329
54.7170
astatham-gatkSNPtimap_l125_m2_e1*
91.2494
84.0525
99.7941
76.0425
256944875256905329
54.7170
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
79.0138
67.0974
96.0770
80.1746
25961273259610658
54.7170
jpowers-varprowlSNPtvsegduphomalt
99.1421
99.9074
98.3886
91.4237
3235332365329
54.7170
ciseli-customINDELD6_15map_l125_m2_e0*
55.0607
53.9683
56.1983
92.1986
6858685329
54.7170
ciseli-customINDELD6_15map_l125_m2_e1*
55.2000
53.9062
56.5574
92.2687
6959695329
54.7170
jlack-gatkINDEL***
98.6899
98.8138
98.5664
60.1151
340455408734033249502708
54.7071
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
79.3428
82.9101
76.0698
72.6664
5322109754041700930
54.7059
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
79.3428
82.9101
76.0698
72.6664
5322109754041700930
54.7059
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
82.0253
80.8399
83.2461
66.0293
61614663612870
54.6875
rpoplin-dv42SNP*map_l100_m0_e0*
99.0394
98.8947
99.1845
66.6640
3247836332474267146
54.6816
gduggal-snapplatSNPtimap_l125_m2_e1*
94.3667
92.4859
96.3257
81.1411
282722297282871079590
54.6803
gduggal-snapplatSNP*map_l150_m2_e0het
92.7026
92.2615
93.1480
87.6370
185751558185971368748
54.6784
gduggal-snapplatSNP*map_l150_m2_e1het
92.7489
92.3145
93.1874
87.6725
187981565188221376752
54.6512
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
60.5216
54.3406
68.2890
64.1858
1119294041456467633696
54.6503
gduggal-snapplatSNPtimap_l125_m2_e0*
94.3195
92.4218
96.2968
81.1125
279652293279801076588
54.6468
gduggal-bwaplatINDELI1_5*het
93.5751
88.7894
98.9060
66.7915
70180886170159776424
54.6392
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
81.1540
77.3058
85.4054
60.1508
63718763210859
54.6296
qzeng-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.3917
97.6114
95.2022
68.9543
4711811539853949662712
54.6114
gduggal-snapplatSNP*map_l150_m0_e0het
89.5077
87.5441
91.5613
90.3664
69519896955641350
54.6022
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
68.0898
55.0736
89.1626
33.2237
7115803624424
54.5455
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
72.3404
78.1609
67.3267
99.9209
6819683318
54.5455
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
68.0000
77.2727
60.7143
97.3585
3410342212
54.5455
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
18.9387
11.0818
65.0794
81.9484
42337412212
54.5455
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
77.0340
78.5714
75.5556
99.4804
33934116
54.5455
ghariani-varprowlINDELI1_5map_l100_m2_e1homalt
97.0093
96.1111
97.9245
77.2337
51921519116
54.5455
gduggal-bwafbSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6944
99.7089
99.6800
57.2704
1712750171305530
54.5455
gduggal-bwafbSNPtimap_l150_m1_e0homalt
99.3830
98.9218
99.8485
72.6540
7248797248116
54.5455
gduggal-bwafbSNPtimap_l150_m2_e0homalt
99.3999
98.9496
99.8542
74.6089
7536807536116
54.5455
gduggal-bwafbSNPtimap_l150_m2_e1homalt
99.3993
98.9471
99.8557
74.6736
7612817612116
54.5455
eyeh-varpipeSNPtimap_l125_m1_e0homalt
99.8628
99.8280
99.8977
68.2342
110261910743116
54.5455
eyeh-varpipeSNPtimap_l125_m2_e0homalt
99.8667
99.8327
99.9006
70.5235
113391911058116
54.5455
eyeh-varpipeSNPtimap_l125_m2_e1homalt
99.8678
99.8342
99.9015
70.5782
114391911154116
54.5455
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
55.1020
96.1986
00272212
54.5455
eyeh-varpipeINDELD16_PLUSmap_sirenhomalt
57.1429
52.9412
62.0690
85.5721
181618116
54.5455
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
98.7842
98.0306
99.5494
36.1496
2240452430116
54.5455
eyeh-varpipeINDELD1_5map_l150_m1_e0*
97.6949
97.9079
97.4828
88.4422
702158522212
54.5455
eyeh-varpipeINDELD1_5map_l150_m2_e0*
97.8351
98.0341
97.6369
88.8302
748159092212
54.5455
hfeng-pmm3SNPtimap_l100_m1_e0homalt
99.8636
99.8497
99.8775
60.0521
1793327179332212
54.5455
hfeng-pmm3SNPtimap_l100_m2_e0homalt
99.8662
99.8525
99.8798
62.5049
1828227182822212
54.5455
hfeng-pmm3SNPtimap_l100_m2_e1homalt
99.8675
99.8540
99.8810
62.4833
1846727184672212
54.5455
jlack-gatkINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.8754
95.3172
96.4401
77.6815
631315962212
54.5455
hfeng-pmm1SNPtimap_l100_m1_e0homalt
99.8580
99.8385
99.8775
60.1505
1793129179312212
54.5455
hfeng-pmm1SNPtimap_l100_m2_e0homalt
99.8607
99.8416
99.8798
62.5925
1828029182802212
54.5455
hfeng-pmm1SNPtimap_l100_m2_e1homalt
99.8621
99.8432
99.8810
62.5754
1846529184652212
54.5455