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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 417 418 419 420 421 422 423 424 425 ... 1720 1721 » 21001-21050 / 86044 show all
qzeng-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	95.6668	95.6114	95.7223	68.1753	90304	4145	148271	6626	3965	59.8400
hfeng-pmm2	INDEL	D1_5	*	*	99.4930	99.1557	99.8326	57.8117	145506	1239	145558	244	146	59.8361
anovak-vg	SNP	*	func_cds	het	98.2393	97.5540	98.9342	34.7247	10888	273	10861	117	70	59.8291
ckim-dragen	INDEL	D6_15	*	het	99.2490	99.4651	99.0338	63.3339	11530	62	11480	112	67	59.8214
ndellapenna-hhga	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	88.3297	92.5249	84.4985	51.0052	557	45	556	102	61	59.8039
hfeng-pmm1	INDEL	D16_PLUS	*	het	97.0973	97.6575	96.5435	74.8637	3085	74	2849	102	61	59.8039
ghariani-varprowl	INDEL	D1_5	segdup	het	92.8475	99.4220	87.0886	96.1448	688	4	688	102	61	59.8039
jpowers-varprowl	SNP	*	HG002complexvar	*	99.4683	99.2937	99.6435	20.7160	749051	5328	749404	2681	1602	59.7538
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	96.8644	95.1747	98.6151	48.2628	11302	573	11322	159	95	59.7484
egarrison-hhga	INDEL	D6_15	HG002complexvar	homalt	95.9329	97.8614	94.0789	59.2766	1144	25	1144	72	43	59.7222
gduggal-snapfb	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	65.7529	52.8540	86.9801	38.4187	963	859	481	72	43	59.7222
ndellapenna-hhga	INDEL	I6_15	HG002complexvar	*	96.1681	95.0125	97.3521	56.1640	4553	239	4559	124	74	59.6774
hfeng-pmm1	INDEL	D16_PLUS	*	*	97.5778	96.8750	98.2909	66.6166	6572	212	6556	114	68	59.6491
astatham-gatk	SNP	*	HG002complexvar	*	99.1835	98.3938	99.9860	19.2643	742264	12117	742112	104	62	59.6154
ltrigg-rtg1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9182	98.0817	99.7690	70.7759	63195	1236	63064	146	87	59.5890
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	95.2752	94.6742	95.8839	71.5291	43268	2434	43282	1858	1107	59.5802
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	95.2752	94.6742	95.8839	71.5291	43268	2434	43282	1858	1107	59.5802
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	62.0854	55.5024	70.4403	70.2247	116	93	112	47	28	59.5745
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	80.9033	83.4146	78.5388	83.2569	171	34	172	47	28	59.5745
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	80.9033	83.4146	78.5388	83.2569	171	34	172	47	28	59.5745
ciseli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	85.3739	82.2047	88.7974	65.9324	2185	473	2156	272	162	59.5588
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	77.8582	76.3275	79.4516	54.8804	4643	1440	6519	1686	1004	59.5492
qzeng-custom	INDEL	*	HG002compoundhet	het	90.0667	93.8691	86.5604	55.7571	3843	251	30091	4672	2782	59.5462
jlack-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.6377	99.1486	98.1322	75.2542	47860	411	47652	907	540	59.5369
ndellapenna-hhga	SNP	ti	map_l100_m0_e0	*	99.0443	98.2959	99.8041	65.3402	21400	371	21401	42	25	59.5238
ndellapenna-hhga	INDEL	D6_15	HG002complexvar	homalt	93.9581	97.7759	90.4272	60.3886	1143	26	1143	121	72	59.5041
eyeh-varpipe	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	0.0000	0.0000	39.3443	96.5321	0	0	24	37	22	59.4595
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6346	99.4826	99.7870	59.5165	16344	85	17330	37	22	59.4595
anovak-vg	INDEL	*	HG002complexvar	het	72.0208	60.7851	88.3522	57.0408	28090	18122	30129	3972	2361	59.4411
egarrison-hhga	SNP	ti	HG002complexvar	*	99.8425	99.7343	99.9509	17.5278	507085	1351	507107	249	148	59.4378
ndellapenna-hhga	INDEL	D16_PLUS	*	homalt	92.1150	94.2080	90.1130	60.6404	1594	98	1595	175	104	59.4286
ciseli-custom	INDEL	*	map_l125_m2_e1	het	69.1293	65.6960	72.9412	91.6361	925	483	930	345	205	59.4203
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	91.9906	94.9155	89.2405	50.9643	16913	906	43453	5239	3113	59.4197
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8658	99.8462	99.8855	53.8968	27916	43	27913	32	19	59.3750
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	97.3268	98.3529	96.3218	51.1785	836	14	838	32	19	59.3750
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.3029	95.1201	97.5155	59.3306	1267	65	1256	32	19	59.3750
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	95.5603	97.8355	93.3884	59.3960	452	10	452	32	19	59.3750
ckim-gatk	SNP	tv	*	homalt	99.5305	99.0738	99.9914	20.3623	373630	3493	373616	32	19	59.3750
jlack-gatk	INDEL	D1_5	HG002complexvar	*	99.4067	99.2878	99.5259	58.0276	32482	233	32539	155	92	59.3548
ghariani-varprowl	SNP	*	map_siren	homalt	99.5027	99.3944	99.6112	54.3239	54822	334	54823	214	127	59.3458
jpowers-varprowl	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.7629	99.8762	95.7372	62.6774	20174	25	20213	900	534	59.3333
gduggal-snapvard	INDEL	D16_PLUS	HG002compoundhet	*	3.4436	1.7941	42.7184	52.9680	42	2299	44	59	35	59.3220
gduggal-snapvard	INDEL	D16_PLUS	HG002compoundhet	het	7.2324	3.9506	42.7184	52.9680	16	389	44	59	35	59.3220
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	74.5124	79.7221	69.9419	60.7095	9982	2539	10713	4604	2731	59.3180
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	90.1406	89.3302	90.9658	70.1878	5735	685	5689	565	335	59.2920
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	90.1406	89.3302	90.9658	70.1878	5735	685	5689	565	335	59.2920
gduggal-bwaplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	83.5790	73.7247	96.4741	64.8422	23586	8406	23586	862	511	59.2807
jpowers-varprowl	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.3156	99.8517	96.8261	47.4887	6735	10	6742	221	131	59.2760
egarrison-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	85.8238	91.8033	80.5755	80.1994	112	10	112	27	16	59.2593
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1492	98.5802	99.7249	57.4159	19580	282	19573	54	32	59.2593

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