PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 38 39 40 41 42 43 44 45 46 ... 1720 1721 » 2051-2100 / 86044 show all
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	97.3617	96.3504	98.3945	78.0353	396	15	429	7	7	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8080	99.6266	99.9901	51.1176	10140	38	10103	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.6147	97.5887	99.6624	46.5729	1457	36	1476	5	5	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6854	99.4272	99.9450	44.5461	3645	21	3633	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.9949	98.9848	99.0050	58.8957	195	2	199	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.1302	98.4848	99.7840	42.2693	455	7	462	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m0_e0	homalt	99.6116	99.6124	99.6109	81.3091	257	1	256	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m1_e0	homalt	99.5779	99.4932	99.6627	79.8505	589	3	591	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m2_e0	homalt	99.5087	99.3453	99.6727	80.7741	607	4	609	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m2_e1	homalt	99.5161	99.3548	99.6779	80.8747	616	4	619	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l125_m0_e0	homalt	99.3243	99.3243	99.3243	85.2590	147	1	147	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l125_m1_e0	homalt	99.4261	99.4269	99.4253	83.1477	347	2	346	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l125_m2_e0	homalt	99.4498	99.4505	99.4490	84.0999	362	2	361	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l150_m0_e0	homalt	98.8235	98.8235	98.8235	89.0886	84	1	84	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l150_m1_e0	homalt	99.3435	99.5614	99.1266	85.6156	227	1	227	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l150_m2_e0	homalt	99.3814	99.5868	99.1770	86.5150	241	1	241	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l150_m2_e1	homalt	99.3980	99.5968	99.2000	86.4352	247	1	248	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	map_siren	hetalt	95.1069	92.8571	97.4684	93.1245	78	6	77	2	2	100.0000
ltrigg-rtg1	INDEL	D6_15	*	hetalt	96.1547	93.1490	99.3609	40.3300	7614	560	7618	49	49	100.0000
ltrigg-rtg1	INDEL	D6_15	HG002complexvar	hetalt	93.3550	91.2142	95.5988	55.5303	924	89	934	43	43	100.0000
ltrigg-rtg1	INDEL	D6_15	HG002compoundhet	hetalt	96.2297	93.1910	99.4731	25.6779	7596	555	7552	40	40	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.4644	86.6019	99.1783	36.1223	2049	317	2052	17	17	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1940	95.0822	99.4017	40.6176	6477	335	6480	39	39	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1173	93.0761	99.3641	35.8818	7501	558	7500	48	48	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.3104	96.3636	98.2759	72.6415	53	2	57	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5343	99.1889	99.8821	57.8109	856	7	847	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	97.0142	96.9697	97.0588	74.4361	32	1	33	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.0444	86.0070	98.9933	33.2437	1469	239	1475	15	15	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.8469	95.1945	98.5577	43.0137	416	21	410	6	6	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1659	93.1102	99.4290	31.4906	6622	490	6617	38	38	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.9025	98.1098	99.7081	39.8904	2751	53	2733	8	8	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.3694	95.3108	99.5190	31.4561	5183	255	5172	25	25	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2779	98.6498	99.9141	39.6579	2338	32	2326	2	2	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.1709	93.1280	99.4195	32.5705	6681	493	6679	39	39	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0126	98.2938	99.7419	42.5046	3111	54	3091	8	8	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1173	93.0761	99.3641	35.8818	7501	558	7500	48	48	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.9114	94.6773	99.2536	28.7725	4518	254	4521	34	34	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	85.9189	75.5734	99.5461	25.8137	659	213	658	3	3	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	91.7858	86.9565	97.1831	21.9780	140	21	138	4	4	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.9615	94.5946	97.3684	70.7692	35	2	37	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	92.6411	87.7193	98.1481	99.2565	50	7	53	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	88.8889	88.8889	88.8889	99.4678	8	1	8	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.1564	96.8697	99.4778	38.9804	1145	37	1143	6	6	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.4970	92.3077	98.9145	36.5749	732	61	729	8	8	100.0000
ltrigg-rtg1	INDEL	D6_15	map_l100_m0_e0	hetalt	91.8919	89.4737	94.4444	84.4828	17	2	17	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	map_l100_m1_e0	hetalt	92.9853	88.2353	98.2759	77.0751	60	8	57	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	map_l100_m2_e0	hetalt	92.9853	88.2353	98.2759	77.6062	60	8	57	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	map_l100_m2_e1	hetalt	91.9372	86.3014	98.3607	77.2388	63	10	60	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	map_siren	hetalt	96.3564	93.9394	98.9011	80.3456	93	6	90	1	1	100.0000
ltrigg-rtg1	INDEL	I16_PLUS	*	hetalt	85.7294	75.3098	99.4953	51.3953	1580	518	1577	8	8	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge