PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20901-20950 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 49.0051 | 33.5664 | 90.7407 | 98.6432 | 48 | 95 | 49 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 40.6561 | 26.7327 | 84.8485 | 99.0214 | 27 | 74 | 28 | 5 | 3 | 60.0000 | |
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | homalt | 95.4792 | 92.9577 | 98.1413 | 83.6474 | 264 | 20 | 264 | 5 | 3 | 60.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 76.1905 | 86.4516 | 0 | 0 | 16 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | * | 94.1537 | 89.4757 | 99.3478 | 96.2604 | 2287 | 269 | 2285 | 15 | 9 | 60.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 62.1803 | 46.4789 | 93.9024 | 80.7963 | 231 | 266 | 231 | 15 | 9 | 60.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0544 | 97.1545 | 98.9712 | 53.5817 | 478 | 14 | 481 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6112 | 97.5894 | 99.6546 | 48.0405 | 7206 | 178 | 7214 | 25 | 15 | 60.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9438 | 95.5133 | 98.4177 | 45.4467 | 1256 | 59 | 1244 | 20 | 12 | 60.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.9996 | 94.3320 | 97.7273 | 81.2766 | 233 | 14 | 215 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.2739 | 96.9720 | 99.6112 | 61.8511 | 1281 | 40 | 1281 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.2405 | 95.8549 | 98.6667 | 91.0990 | 370 | 16 | 370 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.0696 | 96.0145 | 98.1481 | 91.0979 | 265 | 11 | 265 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.8449 | 99.7933 | 99.8965 | 69.7243 | 4827 | 10 | 4827 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.8093 | 99.7776 | 99.8411 | 72.0082 | 3141 | 7 | 3141 | 5 | 3 | 60.0000 | |
| jpowers-varprowl | INDEL | * | map_l125_m0_e0 | het | 92.6995 | 93.0153 | 92.3858 | 91.5475 | 546 | 41 | 546 | 45 | 27 | 60.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m1_e0 | homalt | 95.2915 | 91.9913 | 98.8372 | 86.0931 | 425 | 37 | 425 | 5 | 3 | 60.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e0 | homalt | 95.3714 | 92.0998 | 98.8839 | 87.1375 | 443 | 38 | 443 | 5 | 3 | 60.0000 | |
| jpowers-varprowl | INDEL | * | map_l250_m1_e0 | * | 90.7563 | 88.5246 | 93.1034 | 96.3179 | 270 | 35 | 270 | 20 | 12 | 60.0000 | |
| jli-custom | SNP | * | map_l250_m0_e0 | * | 97.2831 | 95.5972 | 99.0296 | 90.2998 | 2041 | 94 | 2041 | 20 | 12 | 60.0000 | |
| jli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9406 | 99.9307 | 99.9505 | 49.4545 | 10095 | 7 | 10095 | 5 | 3 | 60.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.4673 | 92.0792 | 94.8980 | 93.3106 | 93 | 8 | 93 | 5 | 3 | 60.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.0299 | 95.4545 | 92.6471 | 93.4866 | 63 | 3 | 63 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8156 | 100.0000 | 99.6318 | 74.2657 | 1353 | 0 | 1353 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5149 | 99.3263 | 99.7043 | 51.4820 | 11795 | 80 | 11800 | 35 | 21 | 60.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 92.3858 | 25 | 0 | 25 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4345 | 88.7599 | 98.6289 | 56.3012 | 2140 | 271 | 2158 | 30 | 18 | 60.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3225 | 98.7905 | 99.8601 | 50.4916 | 3594 | 44 | 3570 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6234 | 99.7183 | 99.5287 | 62.3224 | 1062 | 3 | 1056 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0890 | 98.6667 | 99.5150 | 57.5021 | 1036 | 14 | 1026 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002compoundhet | het | 94.6384 | 94.2308 | 95.0495 | 73.6292 | 196 | 12 | 192 | 10 | 6 | 60.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 88.5843 | 82.5175 | 95.6140 | 92.1971 | 118 | 25 | 109 | 5 | 3 | 60.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.8493 | 100.0000 | 97.7247 | 57.8619 | 858 | 0 | 859 | 20 | 12 | 60.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m1_e0 | homalt | 99.2467 | 99.1803 | 99.3132 | 84.0316 | 726 | 6 | 723 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e0 | homalt | 99.2113 | 99.0826 | 99.3404 | 85.1285 | 756 | 7 | 753 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | homalt | 99.1349 | 99.3506 | 98.9201 | 86.9172 | 459 | 3 | 458 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | homalt | 99.1690 | 99.3763 | 98.9627 | 88.0782 | 478 | 3 | 477 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e1 | homalt | 99.1897 | 99.3902 | 98.9899 | 88.0435 | 489 | 3 | 490 | 5 | 3 | 60.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | het | 75.0000 | 80.0000 | 70.5882 | 92.6407 | 24 | 6 | 24 | 10 | 6 | 60.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e0 | het | 75.0000 | 80.0000 | 70.5882 | 93.5484 | 24 | 6 | 24 | 10 | 6 | 60.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e1 | het | 75.0000 | 80.0000 | 70.5882 | 93.6803 | 24 | 6 | 24 | 10 | 6 | 60.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.8939 | 99.9277 | 97.8814 | 65.9861 | 1382 | 1 | 1386 | 30 | 18 | 60.0000 | |
| ghariani-varprowl | SNP | ti | map_l125_m0_e0 | homalt | 98.6718 | 97.5952 | 99.7724 | 69.9542 | 4383 | 108 | 4383 | 10 | 6 | 60.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | homalt | 98.5965 | 98.9437 | 98.2517 | 86.4967 | 281 | 3 | 281 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | hetalt | 78.9505 | 73.7426 | 84.9498 | 82.4839 | 997 | 355 | 508 | 90 | 54 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.8785 | 95.3488 | 92.4528 | 68.3014 | 246 | 12 | 245 | 20 | 12 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.2779 | 97.9943 | 98.5632 | 89.1589 | 342 | 7 | 343 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.3490 | 98.0769 | 98.6226 | 89.6286 | 357 | 7 | 358 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.3846 | 98.1183 | 98.6523 | 89.5962 | 365 | 7 | 366 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | homalt | 97.9836 | 98.4848 | 97.4874 | 91.7152 | 195 | 3 | 194 | 5 | 3 | 60.0000 | |