PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20801-20850 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0301 | 97.2414 | 98.8318 | 65.5949 | 423 | 12 | 423 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.4946 | 94.4444 | 98.6357 | 82.7265 | 1445 | 85 | 1446 | 20 | 12 | 60.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.4946 | 94.4444 | 98.6357 | 82.7265 | 1445 | 85 | 1446 | 20 | 12 | 60.0000 | |
| jlack-gatk | INDEL | D16_PLUS | HG002complexvar | het | 97.0657 | 97.5610 | 96.5753 | 68.6359 | 1080 | 27 | 846 | 30 | 18 | 60.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.9898 | 93.7500 | 94.2308 | 79.6557 | 270 | 18 | 245 | 15 | 9 | 60.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.2293 | 99.4208 | 99.0385 | 80.7763 | 515 | 3 | 515 | 5 | 3 | 60.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.1533 | 99.2467 | 99.0602 | 82.1116 | 527 | 4 | 527 | 5 | 3 | 60.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.1674 | 99.2593 | 99.0758 | 82.1511 | 536 | 4 | 536 | 5 | 3 | 60.0000 | |
| jlack-gatk | INDEL | I6_15 | map_siren | homalt | 96.7391 | 98.8889 | 94.6809 | 84.1484 | 89 | 1 | 89 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | homalt | 98.4615 | 99.4819 | 97.4619 | 93.5494 | 192 | 1 | 192 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | homalt | 99.0270 | 99.1342 | 98.9201 | 87.1816 | 458 | 4 | 458 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e0 | homalt | 99.0654 | 99.1684 | 98.9627 | 88.3152 | 477 | 4 | 477 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | HG002complexvar | * | 96.3580 | 94.4005 | 98.3985 | 65.2184 | 1551 | 92 | 1536 | 25 | 15 | 60.0000 | |
| jlack-gatk | SNP | tv | * | homalt | 99.9678 | 99.9488 | 99.9867 | 20.1040 | 376930 | 193 | 376912 | 50 | 30 | 60.0000 | |
| jlack-gatk | SNP | tv | map_l250_m0_e0 | homalt | 97.1429 | 96.8912 | 97.3958 | 93.0207 | 187 | 6 | 187 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | * | map_l100_m1_e0 | homalt | 99.1850 | 99.1850 | 99.1850 | 82.2765 | 1217 | 10 | 1217 | 10 | 6 | 60.0000 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | homalt | 98.9177 | 98.9177 | 98.9177 | 87.2411 | 457 | 5 | 457 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | * | map_l150_m2_e0 | homalt | 98.9605 | 98.9605 | 98.9605 | 88.3873 | 476 | 5 | 476 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6106 | 99.5460 | 99.6753 | 76.5566 | 1535 | 7 | 1535 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_siren | homalt | 99.7534 | 99.9175 | 99.5898 | 76.7011 | 1211 | 1 | 1214 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.1339 | 92.7126 | 97.6852 | 79.5455 | 229 | 18 | 211 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.3525 | 92.6174 | 96.1538 | 75.7009 | 138 | 11 | 125 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | SNP | tv | * | homalt | 99.9887 | 99.9854 | 99.9920 | 20.6594 | 377068 | 55 | 377060 | 30 | 18 | 60.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | homalt | 98.2005 | 98.9637 | 97.4490 | 93.5569 | 191 | 2 | 191 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.8936 | 93.4498 | 98.4686 | 80.8504 | 642 | 45 | 643 | 10 | 6 | 60.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.6815 | 95.5513 | 99.9088 | 57.5685 | 5477 | 255 | 5478 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8124 | 100.0000 | 97.6526 | 78.1089 | 208 | 0 | 208 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.5197 | 100.0000 | 99.0440 | 78.7398 | 518 | 0 | 518 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5314 | 100.0000 | 99.0672 | 80.3663 | 531 | 0 | 531 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5392 | 100.0000 | 99.0826 | 80.4869 | 540 | 0 | 540 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.3517 | 93.1174 | 97.6959 | 79.6053 | 230 | 17 | 212 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8615 | 99.7820 | 99.9410 | 72.3104 | 16938 | 37 | 16938 | 10 | 6 | 60.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8615 | 99.7820 | 99.9410 | 72.3104 | 16938 | 37 | 16938 | 10 | 6 | 60.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8700 | 99.7836 | 99.9566 | 69.9578 | 11527 | 25 | 11527 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8700 | 99.7836 | 99.9566 | 69.9578 | 11527 | 25 | 11527 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8432 | 99.7787 | 99.9077 | 76.2675 | 5411 | 12 | 5411 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.6879 | 92.0949 | 99.5726 | 86.9710 | 1165 | 100 | 1165 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.3244 | 88.0353 | 99.2898 | 87.3699 | 699 | 95 | 699 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8432 | 99.7787 | 99.9077 | 76.2675 | 5411 | 12 | 5411 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | homalt | 98.4615 | 99.4819 | 97.4619 | 93.6122 | 192 | 1 | 192 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | homalt | 98.7741 | 99.2958 | 98.2578 | 85.7498 | 282 | 2 | 282 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.9244 | 92.1529 | 97.8678 | 75.1983 | 458 | 39 | 459 | 10 | 6 | 60.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8124 | 100.0000 | 97.6526 | 79.2398 | 208 | 0 | 208 | 5 | 3 | 60.0000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.6743 | 90.1869 | 99.6315 | 70.8673 | 1351 | 147 | 1352 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | homalt | 99.2481 | 99.1803 | 99.3160 | 86.5054 | 726 | 6 | 726 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e1 | homalt | 98.8810 | 98.7805 | 98.9817 | 89.8846 | 486 | 6 | 486 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.7296 | 100.0000 | 99.4606 | 78.2343 | 922 | 0 | 922 | 5 | 3 | 60.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.9523 | 95.2381 | 92.7007 | 57.3209 | 380 | 19 | 381 | 30 | 18 | 60.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9819 | 99.4169 | 98.5507 | 55.3109 | 341 | 2 | 340 | 5 | 3 | 60.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | * | 90.1715 | 88.0000 | 92.4528 | 85.4555 | 242 | 33 | 245 | 20 | 12 | 60.0000 | |