PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20401-20450 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.0772 | 83.7398 | 97.4522 | 74.9001 | 309 | 60 | 306 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | INDEL | I1_5 | HG002complexvar | hetalt | 73.7418 | 73.4647 | 74.0210 | 78.5933 | 1268 | 458 | 775 | 272 | 170 | 62.5000 | |
| gduggal-snapvard | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 57.8947 | 87.4172 | 0 | 0 | 11 | 8 | 5 | 62.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 3.5385 | 1.9267 | 21.6495 | 84.1374 | 41 | 2087 | 42 | 152 | 95 | 62.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 7.2121 | 4.3609 | 20.8333 | 84.0266 | 29 | 636 | 40 | 152 | 95 | 62.5000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.1862 | 76.5690 | 98.5663 | 43.2350 | 549 | 168 | 550 | 8 | 5 | 62.5000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.5172 | 82.6667 | 88.5714 | 44.4444 | 62 | 13 | 62 | 8 | 5 | 62.5000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 69.3642 | 92.3077 | 55.5556 | 70.4918 | 12 | 1 | 10 | 8 | 5 | 62.5000 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002complexvar | hetalt | 89.9158 | 83.5821 | 97.2881 | 65.1300 | 280 | 55 | 287 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | * | * | het | 99.5990 | 99.6559 | 99.5422 | 61.2168 | 193465 | 668 | 193091 | 888 | 555 | 62.5000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.9027 | 95.4955 | 96.3134 | 65.1685 | 212 | 10 | 209 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7564 | 96.8254 | 98.7055 | 66.0626 | 610 | 20 | 610 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | HG002compoundhet | * | 99.7478 | 99.7647 | 99.7310 | 49.0520 | 8902 | 21 | 8897 | 24 | 15 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | homalt | 99.6730 | 99.4360 | 99.9111 | 59.6774 | 8992 | 51 | 8992 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e0 | homalt | 99.6791 | 99.4465 | 99.9128 | 62.0923 | 9163 | 51 | 9163 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e1 | homalt | 99.6821 | 99.4517 | 99.9136 | 62.0828 | 9251 | 51 | 9251 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | homalt | 99.5463 | 99.2321 | 99.8626 | 64.6877 | 5815 | 45 | 5815 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e0 | homalt | 99.5582 | 99.2521 | 99.8662 | 67.1591 | 5972 | 45 | 5972 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e1 | homalt | 99.5624 | 99.2591 | 99.8675 | 67.1759 | 6029 | 45 | 6029 | 8 | 5 | 62.5000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.6411 | 95.0774 | 98.2571 | 84.2376 | 1352 | 70 | 1353 | 24 | 15 | 62.5000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4954 | 99.2083 | 99.7842 | 37.6168 | 7393 | 59 | 7397 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | * | 96.2226 | 96.0656 | 96.3801 | 98.1181 | 293 | 12 | 426 | 16 | 10 | 62.5000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2859 | 91.1304 | 99.8384 | 63.0944 | 4942 | 481 | 4944 | 8 | 5 | 62.5000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.2859 | 91.1304 | 99.8384 | 63.0944 | 4942 | 481 | 4944 | 8 | 5 | 62.5000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6846 | 96.8924 | 98.4899 | 76.8920 | 2089 | 67 | 2087 | 32 | 20 | 62.5000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5100 | 96.3492 | 98.6992 | 65.8143 | 607 | 23 | 607 | 8 | 5 | 62.5000 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | homalt | 97.3588 | 97.5352 | 97.1831 | 87.5874 | 277 | 7 | 276 | 8 | 5 | 62.5000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5453 | 99.6109 | 99.4798 | 78.1348 | 1536 | 6 | 1530 | 8 | 5 | 62.5000 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.7267 | 99.0177 | 98.4375 | 85.4504 | 504 | 5 | 504 | 8 | 5 | 62.5000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4812 | 99.4812 | 99.4812 | 78.2296 | 1534 | 8 | 1534 | 8 | 5 | 62.5000 | |
| ciseli-custom | INDEL | * | func_cds | homalt | 89.9834 | 87.6106 | 92.4883 | 28.5235 | 198 | 28 | 197 | 16 | 10 | 62.5000 | |
| ciseli-custom | INDEL | * | map_l100_m0_e0 | * | 68.0279 | 62.5720 | 74.5262 | 89.7426 | 978 | 585 | 983 | 336 | 210 | 62.5000 | |
| ciseli-custom | INDEL | * | map_l150_m0_e0 | homalt | 61.1885 | 50.6098 | 77.3585 | 93.7537 | 83 | 81 | 82 | 24 | 15 | 62.5000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.0579 | 96.6667 | 97.4522 | 75.4879 | 319 | 11 | 306 | 8 | 5 | 62.5000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.4419 | 95.8245 | 95.0624 | 80.9574 | 10350 | 451 | 10358 | 538 | 336 | 62.4535 | |
| egarrison-hhga | INDEL | I6_15 | * | het | 97.7387 | 97.1494 | 98.3352 | 52.6628 | 9747 | 286 | 9746 | 165 | 103 | 62.4242 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 52.3244 | 38.4502 | 81.8636 | 44.8624 | 1047 | 1676 | 492 | 109 | 68 | 62.3853 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8570 | 98.7533 | 98.9610 | 74.4420 | 30100 | 380 | 29622 | 311 | 194 | 62.3794 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8570 | 98.7533 | 98.9610 | 74.4420 | 30100 | 380 | 29622 | 311 | 194 | 62.3794 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 83.1025 | 78.7956 | 87.9076 | 66.5360 | 2787 | 750 | 2777 | 382 | 238 | 62.3037 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.5288 | 96.1960 | 94.8708 | 69.9124 | 4653 | 184 | 4661 | 252 | 157 | 62.3016 | |
| ciseli-custom | INDEL | * | map_l150_m2_e1 | * | 65.3436 | 59.0688 | 73.1100 | 93.1469 | 850 | 589 | 851 | 313 | 195 | 62.3003 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 81.6457 | 73.4098 | 91.9631 | 60.0526 | 704 | 255 | 698 | 61 | 38 | 62.2951 | |
| ltrigg-rtg1 | INDEL | I6_15 | * | * | 97.4037 | 95.4115 | 99.4808 | 44.5038 | 23684 | 1139 | 23374 | 122 | 76 | 62.2951 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 68.1699 | 56.9831 | 84.8219 | 60.1659 | 2089 | 1577 | 3096 | 554 | 345 | 62.2744 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 76.1074 | 78.6642 | 73.7116 | 78.2560 | 1696 | 460 | 1702 | 607 | 378 | 62.2735 | |
| ckim-vqsr | INDEL | * | HG002complexvar | het | 99.5556 | 99.3270 | 99.7852 | 57.9433 | 45901 | 311 | 45518 | 98 | 61 | 62.2449 | |
| ciseli-custom | INDEL | * | map_l150_m2_e0 | * | 65.2883 | 59.0199 | 73.0465 | 93.1719 | 831 | 577 | 832 | 307 | 191 | 62.2150 | |
| anovak-vg | INDEL | I1_5 | map_l150_m0_e0 | * | 58.6797 | 59.6591 | 57.7320 | 93.8118 | 105 | 71 | 112 | 82 | 51 | 62.1951 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 84.2998 | 74.7038 | 96.7245 | 58.1245 | 15386 | 5210 | 15385 | 521 | 324 | 62.1881 | |